miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 170680 0.68 0.962199
Target:  5'- --gGCCAGGggcgCCCCGGGGaCCGUcGCg -3'
miRNA:   3'- gggCGGUCUa---GGGGUUCUaGGUAuUG- -5'
28855 5' -52.6 NC_006146.1 + 170619 0.66 0.987003
Target:  5'- gCCCGCCcccGGGUCuuCCCGGGcUCCcccucacggGUGGCg -3'
miRNA:   3'- -GGGCGG---UCUAG--GGGUUCuAGG---------UAUUG- -5'
28855 5' -52.6 NC_006146.1 + 169905 0.66 0.985334
Target:  5'- gUUGCCAGGuuaaguUCCCCGAGGaCCAaUGAUc -3'
miRNA:   3'- gGGCGGUCU------AGGGGUUCUaGGU-AUUG- -5'
28855 5' -52.6 NC_006146.1 + 166408 0.69 0.921205
Target:  5'- gCCCGCCAGugccAUCUCCAcaAGAcaCGUAACc -3'
miRNA:   3'- -GGGCGGUC----UAGGGGU--UCUagGUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 164166 0.69 0.921205
Target:  5'- aUCUGCCGGAUCaCCCGGGucaccuUCCGg--- -3'
miRNA:   3'- -GGGCGGUCUAG-GGGUUCu-----AGGUauug -5'
28855 5' -52.6 NC_006146.1 + 162844 0.68 0.946382
Target:  5'- uUuuGCCAGAcacCCCCAgggccGGGUCCA--GCg -3'
miRNA:   3'- -GggCGGUCUa--GGGGU-----UCUAGGUauUG- -5'
28855 5' -52.6 NC_006146.1 + 162471 0.75 0.643041
Target:  5'- cCCCGagcucuCCuGGUCCCCAGGGUCCG-GACu -3'
miRNA:   3'- -GGGC------GGuCUAGGGGUUCUAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 157807 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 156792 0.67 0.968744
Target:  5'- gCCGCCAGcagCCCCGAcAUCCc---- -3'
miRNA:   3'- gGGCGGUCua-GGGGUUcUAGGuauug -5'
28855 5' -52.6 NC_006146.1 + 156715 0.71 0.84479
Target:  5'- cCCCGuCCAGGcUCCgGGGGUCCAgccUGGCg -3'
miRNA:   3'- -GGGC-GGUCUaGGGgUUCUAGGU---AUUG- -5'
28855 5' -52.6 NC_006146.1 + 155844 0.66 0.97934
Target:  5'- cCCCGCCAGugccUCCUCGcAGGcCCGgcgGGCc -3'
miRNA:   3'- -GGGCGGUCu---AGGGGU-UCUaGGUa--UUG- -5'
28855 5' -52.6 NC_006146.1 + 154729 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 153315 0.69 0.92619
Target:  5'- gCCCggGCCAGGUCgCCCAGcAUCCGauugaucUGGCg -3'
miRNA:   3'- -GGG--CGGUCUAG-GGGUUcUAGGU-------AUUG- -5'
28855 5' -52.6 NC_006146.1 + 152644 0.66 0.983506
Target:  5'- aCCUGacCCAcGcUCCCCAGGcuGUCCAUGAg -3'
miRNA:   3'- -GGGC--GGU-CuAGGGGUUC--UAGGUAUUg -5'
28855 5' -52.6 NC_006146.1 + 151652 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 149557 0.66 0.987003
Target:  5'- gCCCGCCGGcagCCCCuccGAga-AUGACu -3'
miRNA:   3'- -GGGCGGUCua-GGGGuu-CUaggUAUUG- -5'
28855 5' -52.6 NC_006146.1 + 148574 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 147373 0.66 0.985334
Target:  5'- gCCGCCAGAcacgggagUCCCGAG-UUCAcGGCg -3'
miRNA:   3'- gGGCGGUCUa-------GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 145496 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5'
28855 5' -52.6 NC_006146.1 + 142418 0.66 0.985334
Target:  5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3'
miRNA:   3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.