miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 19263 0.66 0.720682
Target:  5'- gCGGGuGCGCCAUCUCaaaGUCGaugaGCCc -3'
miRNA:   3'- aGCUCuCGCGGUGGGGg--UAGCgg--UGG- -5'
2887 3' -60.5 NC_001493.1 + 27822 0.66 0.720682
Target:  5'- uUCGAGucCGgCACCggaucgacacuCUCAUCGUCACCc -3'
miRNA:   3'- -AGCUCucGCgGUGG-----------GGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 53205 0.66 0.714885
Target:  5'- cUCGAGAcgagcgagcacaaccGCGUaagaUACCCCCGUacuccCGCCuCCg -3'
miRNA:   3'- -AGCUCU---------------CGCG----GUGGGGGUA-----GCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 129948 0.66 0.711007
Target:  5'- cCGuGAGguuaGCgGCCCCCG-CGUCGCUc -3'
miRNA:   3'- aGCuCUCg---CGgUGGGGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14394 0.66 0.711007
Target:  5'- cCGuGAGguuaGCgGCCCCCG-CGUCGCUc -3'
miRNA:   3'- aGCuCUCg---CGgUGGGGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 90209 0.66 0.711007
Target:  5'- cCGGaauGCGCUAUaCCCCAaaugCGCCAUCg -3'
miRNA:   3'- aGCUcu-CGCGGUG-GGGGUa---GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 10647 0.66 0.711007
Target:  5'- cUCGGGAcGCGCCcgaucgcgcgaGCuCCCCGgguUCGaCACCc -3'
miRNA:   3'- -AGCUCU-CGCGG-----------UG-GGGGU---AGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 126201 0.66 0.711007
Target:  5'- cUCGGGAcGCGCCcgaucgcgcgaGCuCCCCGgguUCGaCACCc -3'
miRNA:   3'- -AGCUCU-CGCGG-----------UG-GGGGU---AGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 62066 0.66 0.70127
Target:  5'- aUCGAGAGUuuaucaggggcuGUCACUaCCgGUUGCCgACCg -3'
miRNA:   3'- -AGCUCUCG------------CGGUGG-GGgUAGCGG-UGG- -5'
2887 3' -60.5 NC_001493.1 + 8051 0.66 0.70127
Target:  5'- cCG-GGGCGUCcguugaaaucgACCCUCGUUucgggGCCACCg -3'
miRNA:   3'- aGCuCUCGCGG-----------UGGGGGUAG-----CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 123605 0.66 0.70127
Target:  5'- cCG-GGGCGUCcguugaaaucgACCCUCGUUucgggGCCACCg -3'
miRNA:   3'- aGCuCUCGCGG-----------UGGGGGUAG-----CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 60442 0.66 0.70127
Target:  5'- cCGcGGGCGCgAUCCCCAgucugaCGCgUACCc -3'
miRNA:   3'- aGCuCUCGCGgUGGGGGUa-----GCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 27971 0.66 0.70127
Target:  5'- aUCGGGGcacGCGCgGCacccgaaCCCGUaucccaguuacCGCCGCCa -3'
miRNA:   3'- -AGCUCU---CGCGgUGg------GGGUA-----------GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 38380 0.66 0.691476
Target:  5'- ----cAGCGUgGCUCCCAUgGaCCACCg -3'
miRNA:   3'- agcucUCGCGgUGGGGGUAgC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 124056 0.66 0.685578
Target:  5'- gCGAGAcGCGCgGCCCCUccacgguucgaagcgGgcacggcgCGCCACg -3'
miRNA:   3'- aGCUCU-CGCGgUGGGGG---------------Ua-------GCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 12672 0.66 0.68065
Target:  5'- gCGAguaucccGAGCGCCccgACCCCgGaCGCgACCc -3'
miRNA:   3'- aGCU-------CUCGCGG---UGGGGgUaGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 128226 0.66 0.68065
Target:  5'- gCGAguaucccGAGCGCCccgACCCCgGaCGCgACCc -3'
miRNA:   3'- aGCU-------CUCGCGG---UGGGGgUaGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 61562 0.66 0.678677
Target:  5'- aCGGGGcGCGCCAUCUCUggcuccucguccgaGUCGCuCACg -3'
miRNA:   3'- aGCUCU-CGCGGUGGGGG--------------UAGCG-GUGg -5'
2887 3' -60.5 NC_001493.1 + 8501 0.66 0.678677
Target:  5'- gCGAGAcGCGCgGCCCCUccacguucgaagcgGgcacggcgCGCCACg -3'
miRNA:   3'- aGCUCU-CGCGgUGGGGG--------------Ua-------GCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 130501 0.66 0.671759
Target:  5'- -gGAGGGUGCCAUagcgCUCC--CGCUACCg -3'
miRNA:   3'- agCUCUCGCGGUG----GGGGuaGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.