miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 115535 0.68 0.602186
Target:  5'- aUCcAGAcccacccuCGCCACCCCCA-CGCCcCCu -3'
miRNA:   3'- -AGcUCUc-------GCGGUGGGGGUaGCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 112517 0.7 0.441157
Target:  5'- aCGGGGGCGCCGaaucaguaCCguUCGCaCGCCg -3'
miRNA:   3'- aGCUCUCGCGGUgg------GGguAGCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 110399 0.7 0.449117
Target:  5'- cCGGGcaucgugugucccAGuCGCCACCCCC--CGCCACa -3'
miRNA:   3'- aGCUC-------------UC-GCGGUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 110266 0.74 0.26028
Target:  5'- uUCGAuGGGUGCCACCaggggcucaaucuuCgCCAUCGCCGCg -3'
miRNA:   3'- -AGCU-CUCGCGGUGG--------------G-GGUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 107051 0.68 0.572542
Target:  5'- -aGAaccGGgGCCGCCCUCAggUCGaCCGCCg -3'
miRNA:   3'- agCUc--UCgCGGUGGGGGU--AGC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 94885 0.69 0.542287
Target:  5'- aUCG-GGGCGUCggacacggccaucGCCCCCGUgGCaccCACCg -3'
miRNA:   3'- -AGCuCUCGCGG-------------UGGGGGUAgCG---GUGG- -5'
2887 3' -60.5 NC_001493.1 + 93816 0.69 0.50502
Target:  5'- aUCGGcGGGCGCgACCUgCAggGCCGCUc -3'
miRNA:   3'- -AGCU-CUCGCGgUGGGgGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 90209 0.66 0.711007
Target:  5'- cCGGaauGCGCUAUaCCCCAaaugCGCCAUCg -3'
miRNA:   3'- aGCUcu-CGCGGUG-GGGGUa---GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 87192 0.67 0.66185
Target:  5'- cCGAGuaUGUCACCacaCCCGcagCGCCACCg -3'
miRNA:   3'- aGCUCucGCGGUGG---GGGUa--GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 87143 0.77 0.18787
Target:  5'- cCGGGGGCGCgcgcguaugguCACCCCCGggaUCGgCACCg -3'
miRNA:   3'- aGCUCUCGCG-----------GUGGGGGU---AGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 84043 0.7 0.467991
Target:  5'- -gGGGAGCGCCGCgCgCCGgacgaacacgGCCACCu -3'
miRNA:   3'- agCUCUCGCGGUGgG-GGUag--------CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 82228 0.68 0.561753
Target:  5'- cUCGAccuccucGGGCugGCCACCCCCGauaUUGUCGCg -3'
miRNA:   3'- -AGCU-------CUCG--CGGUGGGGGU---AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 79965 0.67 0.641972
Target:  5'- -gGAGcAGCGCaACCCCCucCGUCACa -3'
miRNA:   3'- agCUC-UCGCGgUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 73809 0.7 0.467991
Target:  5'- uUCGAG-GCGCCACUaaaCUAuaaaaaggucauUCGCCACa -3'
miRNA:   3'- -AGCUCuCGCGGUGGg--GGU------------AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 71414 0.67 0.650924
Target:  5'- aCGAGAGUuCCAuuuCCCCCAgugccucgagucUCGCCcuguugaGCCu -3'
miRNA:   3'- aGCUCUCGcGGU---GGGGGU------------AGCGG-------UGG- -5'
2887 3' -60.5 NC_001493.1 + 69510 0.68 0.592275
Target:  5'- cCGAGGgguauggcgcGCGCCuuCCCCAUCGCguUACa -3'
miRNA:   3'- aGCUCU----------CGCGGugGGGGUAGCG--GUGg -5'
2887 3' -60.5 NC_001493.1 + 69304 0.69 0.514477
Target:  5'- cCGAGuAGUcCCgACCCCCAacccagUCGCaCACCg -3'
miRNA:   3'- aGCUC-UCGcGG-UGGGGGU------AGCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 67667 0.7 0.467991
Target:  5'- gCGAGuAGCGCCAaCCCCGaUGgUACCa -3'
miRNA:   3'- aGCUC-UCGCGGUgGGGGUaGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 66581 0.68 0.562732
Target:  5'- cUCGGGAuaGUGCCGCCCCCcuacuAUUaCgGCCg -3'
miRNA:   3'- -AGCUCU--CGCGGUGGGGG-----UAGcGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 66060 0.67 0.641972
Target:  5'- gUCGuAGAGCuuCCACCCgCCAaagcUCGCgugCGCCa -3'
miRNA:   3'- -AGC-UCUCGc-GGUGGG-GGU----AGCG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.