Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28876 | 3' | -61.1 | NC_006146.1 | + | 42946 | 0.66 | 0.746137 |
Target: 5'- ---cGGUCCcUGCccUCCGCCCC-GGGc -3' miRNA: 3'- agacCCAGGuGCGa-AGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 22598 | 0.66 | 0.755315 |
Target: 5'- gUCUGGcucUCCGCGCUcCUGCUggagcuccuguUCUGGGu -3' miRNA: 3'- -AGACCc--AGGUGCGAaGGCGG-----------GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 167528 | 0.66 | 0.727518 |
Target: 5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3' miRNA: 3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 169664 | 0.67 | 0.699048 |
Target: 5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3' miRNA: 3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 413 | 0.67 | 0.699048 |
Target: 5'- --gGGGUCCGgggaagcccccCGCU--CGCCCCUcGGGu -3' miRNA: 3'- agaCCCAGGU-----------GCGAagGCGGGGA-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 16710 | 0.67 | 0.66041 |
Target: 5'- ---aGGUCCACGa---CGCCCCgGGGu -3' miRNA: 3'- agacCCAGGUGCgaagGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 168732 | 0.67 | 0.699048 |
Target: 5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3' miRNA: 3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 167800 | 0.67 | 0.699048 |
Target: 5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3' miRNA: 3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 125978 | 0.67 | 0.689446 |
Target: 5'- gCUGGGUCCGCacucGCggCUGCgaggCUUGGGa -3' miRNA: 3'- aGACCCAGGUG----CGaaGGCGg---GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 93590 | 0.67 | 0.699048 |
Target: 5'- cCUGGGcaUGCGCgacCCGCCgggcuCCUGGGg -3' miRNA: 3'- aGACCCagGUGCGaa-GGCGG-----GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 33950 | 0.67 | 0.66041 |
Target: 5'- gCUGGGUCCGCuggUCCGggugggcgugguCCgCUGGGu -3' miRNA: 3'- aGACCCAGGUGcgaAGGC------------GGgGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 137619 | 0.67 | 0.66041 |
Target: 5'- cCUGGGUCCGCuGgUUCgGUucaCCUGGa -3' miRNA: 3'- aGACCCAGGUG-CgAAGgCGg--GGACCc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 154176 | 0.67 | 0.6798 |
Target: 5'- uUCUGuaGGUCCACaGUaUCCaCCCCgGGGc -3' miRNA: 3'- -AGAC--CCAGGUG-CGaAGGcGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 114322 | 0.68 | 0.601969 |
Target: 5'- --cGGGcUCgGCGCccggCCGCCCCUGacGGa -3' miRNA: 3'- agaCCC-AGgUGCGaa--GGCGGGGAC--CC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 24074 | 0.68 | 0.621438 |
Target: 5'- --cGGGcUCUACGCUggcgCgGCCucgCCUGGGa -3' miRNA: 3'- agaCCC-AGGUGCGAa---GgCGG---GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 74398 | 0.68 | 0.631188 |
Target: 5'- uUCUugGGGUCCuuGCGCUgggaguUCUGCUCCaggUGGGc -3' miRNA: 3'- -AGA--CCCAGG--UGCGA------AGGCGGGG---ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 113121 | 0.68 | 0.640937 |
Target: 5'- --gGGGgaugCCAUGuCUUCCGCCggUGGGu -3' miRNA: 3'- agaCCCa---GGUGC-GAAGGCGGggACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 163186 | 0.68 | 0.621438 |
Target: 5'- --cGGGcaguggCUugGCUUCUGCCCCUcagaggagccGGGc -3' miRNA: 3'- agaCCCa-----GGugCGAAGGCGGGGA----------CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 33249 | 0.69 | 0.553756 |
Target: 5'- --cGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3' miRNA: 3'- agaCCCAGGUG---CGaaGGCGGGG--------ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 8041 | 0.69 | 0.572933 |
Target: 5'- gCUGGcaCC-CGCUggacCCGgCCCUGGGg -3' miRNA: 3'- aGACCcaGGuGCGAa---GGCgGGGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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