miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2888 5' -52.4 NC_001493.1 + 32928 0.66 0.98253
Target:  5'- --aGACGGuGUaGAacUCGGGGGUCAcgACCCc -3'
miRNA:   3'- gacCUGUC-CA-CU--AGCUCCUAGU--UGGG- -5'
2888 5' -52.4 NC_001493.1 + 18152 0.66 0.98253
Target:  5'- cCUGGACGcGGccccgaaacUGAUCGAGugggaGGUCucgggGACCCg -3'
miRNA:   3'- -GACCUGU-CC---------ACUAGCUC-----CUAG-----UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 133706 0.66 0.98253
Target:  5'- cCUGGACGcGGccccgaaacUGAUCGAGugggaGGUCucgggGACCCg -3'
miRNA:   3'- -GACCUGU-CC---------ACUAGCUC-----CUAG-----UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 115476 0.66 0.98253
Target:  5'- aCUGGACAGGUauUCucuGGA---GCCCa -3'
miRNA:   3'- -GACCUGUCCAcuAGcu-CCUaguUGGG- -5'
2888 5' -52.4 NC_001493.1 + 54181 0.66 0.98253
Target:  5'- aCUGGcgaAGGUGAagCGAGGGgccgCgAACCUg -3'
miRNA:   3'- -GACCug-UCCACUa-GCUCCUa---G-UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 102016 0.66 0.980424
Target:  5'- aUGGugGGGUGAcCGAu-GUC-ACCCa -3'
miRNA:   3'- gACCugUCCACUaGCUccUAGuUGGG- -5'
2888 5' -52.4 NC_001493.1 + 15437 0.66 0.978134
Target:  5'- -cGGACGGG-GAguucugcuUCGGGGA-CGGCgCCu -3'
miRNA:   3'- gaCCUGUCCaCU--------AGCUCCUaGUUG-GG- -5'
2888 5' -52.4 NC_001493.1 + 130991 0.66 0.978134
Target:  5'- -cGGACGGG-GAguucugcuUCGGGGA-CGGCgCCu -3'
miRNA:   3'- gaCCUGUCCaCU--------AGCUCCUaGUUG-GG- -5'
2888 5' -52.4 NC_001493.1 + 87925 0.66 0.978134
Target:  5'- -gGGGCAGGUccaguuuAUCGAGG-UCAugGCUCa -3'
miRNA:   3'- gaCCUGUCCAc------UAGCUCCuAGU--UGGG- -5'
2888 5' -52.4 NC_001493.1 + 39496 0.66 0.978134
Target:  5'- -cGGACGGagcucGUGAUCGAGucguccguGGUCGcCCCc -3'
miRNA:   3'- gaCCUGUC-----CACUAGCUC--------CUAGUuGGG- -5'
2888 5' -52.4 NC_001493.1 + 88854 0.66 0.975653
Target:  5'- aCUGGACgagaaaacaaAGG-GAuUCGGGGA--GACCCu -3'
miRNA:   3'- -GACCUG----------UCCaCU-AGCUCCUagUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 90615 0.66 0.975394
Target:  5'- aUGGAC-GGUGcgcUCG-GGGUCAugagccacaucaaGCCCg -3'
miRNA:   3'- gACCUGuCCACu--AGCuCCUAGU-------------UGGG- -5'
2888 5' -52.4 NC_001493.1 + 60133 0.66 0.975394
Target:  5'- -cGGACAGGUGGacucaucgaaauuUCGGGuucggagaGGUCAGUCCa -3'
miRNA:   3'- gaCCUGUCCACU-------------AGCUC--------CUAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 93318 0.66 0.97487
Target:  5'- aUGGuuCGGGUGAccgCGcGGAccggugcgcucguaUCGACCCg -3'
miRNA:   3'- gACCu-GUCCACUa--GCuCCU--------------AGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 60399 0.66 0.972692
Target:  5'- --cGAUAGGUcacacguGUCGAGGGUCAccaagccaccggcGCCCg -3'
miRNA:   3'- gacCUGUCCAc------UAGCUCCUAGU-------------UGGG- -5'
2888 5' -52.4 NC_001493.1 + 87692 0.66 0.970083
Target:  5'- -gGGGCAGGUcccgggguaGGUcCGGGGGUaGAUCCg -3'
miRNA:   3'- gaCCUGUCCA---------CUA-GCUCCUAgUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 29746 0.66 0.970083
Target:  5'- -aGGuccauCAcGGUGGUccCGAGGGUCGucucGCCCu -3'
miRNA:   3'- gaCCu----GU-CCACUA--GCUCCUAGU----UGGG- -5'
2888 5' -52.4 NC_001493.1 + 87746 0.66 0.970083
Target:  5'- -gGGGCAGGUcccgggguaGGUcCGGGGGUaGAUCCg -3'
miRNA:   3'- gaCCUGUCCA---------CUA-GCUCCUAgUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 131898 0.66 0.969175
Target:  5'- aUGGACAggaaggucucGGUGAgugCGGGGAaggucuccgcgccaUCaAACCCc -3'
miRNA:   3'- gACCUGU----------CCACUa--GCUCCU--------------AG-UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 16344 0.66 0.969175
Target:  5'- aUGGACAggaaggucucGGUGAgugCGGGGAaggucuccgcgccaUCaAACCCc -3'
miRNA:   3'- gACCUGU----------CCACUa--GCUCCU--------------AG-UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.