Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28886 | 5' | -58.3 | NC_006146.1 | + | 137612 | 0.66 | 0.828669 |
Target: 5'- cGGCgGCGCAGCggugcccagccgGGCCACcccccacccGGAGCGg -3' miRNA: 3'- -CCGgUGCGUUG------------UCGGUGac-------CCUCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 170148 | 0.66 | 0.802853 |
Target: 5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3' miRNA: 3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 99374 | 0.66 | 0.802853 |
Target: 5'- gGGCCGCGCGuugaGGCCca--GGAGCGa -3' miRNA: 3'- -CCGGUGCGUug--UCGGugacCCUCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 147277 | 0.66 | 0.828669 |
Target: 5'- aGGCgACGCAggcuagucuuuAUGGUUACaaacaUGGGAGCGUg -3' miRNA: 3'- -CCGgUGCGU-----------UGUCGGUG-----ACCCUCGUA- -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 92087 | 0.66 | 0.802853 |
Target: 5'- cGGCUgccuggACGCGugGGCCuccCaGGGAGUAUu -3' miRNA: 3'- -CCGG------UGCGUugUCGGu--GaCCCUCGUA- -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 114158 | 0.66 | 0.802853 |
Target: 5'- aGGCgCAUGCu--GGCC-CUGGGcAGCAg -3' miRNA: 3'- -CCG-GUGCGuugUCGGuGACCC-UCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 168285 | 0.66 | 0.802853 |
Target: 5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3' miRNA: 3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 169217 | 0.66 | 0.802853 |
Target: 5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3' miRNA: 3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 167353 | 0.66 | 0.802853 |
Target: 5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3' miRNA: 3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 86247 | 0.66 | 0.793932 |
Target: 5'- gGGCUugGUugacAGCAGgCACgUGGGcAGCAc -3' miRNA: 3'- -CCGGugCG----UUGUCgGUG-ACCC-UCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 162010 | 0.66 | 0.784868 |
Target: 5'- uGGCCACG-AAUuGCUaacuuaaaACUGGGAGCc- -3' miRNA: 3'- -CCGGUGCgUUGuCGG--------UGACCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 128791 | 0.66 | 0.784868 |
Target: 5'- gGGCCgaaGCGUGAuCGGCCACacaGGGAGgGg -3' miRNA: 3'- -CCGG---UGCGUU-GUCGGUGa--CCCUCgUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 137490 | 0.66 | 0.828669 |
Target: 5'- cGGCgGCGCAGCggugcccaggcgGGCCACcccccacccGGAGCGg -3' miRNA: 3'- -CCGgUGCGUUG------------UCGGUGac-------CCUCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 114968 | 0.66 | 0.828669 |
Target: 5'- gGGgCACGCAGCAGCCcAC-GGccGCGg -3' miRNA: 3'- -CCgGUGCGUUGUCGG-UGaCCcuCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 111727 | 0.66 | 0.828669 |
Target: 5'- aGGCCACcaCAAagguGGCaCACUGGGuGGCGUc -3' miRNA: 3'- -CCGGUGc-GUUg---UCG-GUGACCC-UCGUA- -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 42860 | 0.66 | 0.826155 |
Target: 5'- aGGcCCACGC-GCAGguuCCACUggugggaggcgaagGGGGGCAc -3' miRNA: 3'- -CC-GGUGCGuUGUC---GGUGA--------------CCCUCGUa -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 391 | 0.66 | 0.820229 |
Target: 5'- aGGCCcCGCccGCcGCgCGCUGGGGGUc- -3' miRNA: 3'- -CCGGuGCGu-UGuCG-GUGACCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 154659 | 0.66 | 0.811622 |
Target: 5'- aGGCCGgGCA--GGCCGggucuugggcCUGGGAGUc- -3' miRNA: 3'- -CCGGUgCGUugUCGGU----------GACCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 76880 | 0.66 | 0.802853 |
Target: 5'- gGGCCGUGCcccuGCcgGGCCGCacgUGGGAGCc- -3' miRNA: 3'- -CCGGUGCGu---UG--UCGGUG---ACCCUCGua -5' |
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28886 | 5' | -58.3 | NC_006146.1 | + | 109498 | 0.66 | 0.793932 |
Target: 5'- uGGCCAC-C-GCAGCCAgcCUGGGA-CAa -3' miRNA: 3'- -CCGGUGcGuUGUCGGU--GACCCUcGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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