miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 5' -58.3 NC_006146.1 + 28761 1.08 0.001968
Target:  5'- gGGCCACGCAACAGCCACUGGGAGCAUa -3'
miRNA:   3'- -CCGGUGCGUUGUCGGUGACCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 60451 0.78 0.219653
Target:  5'- uGGCCGagugaGCGGCAgGCCGCgGGGAGCGg -3'
miRNA:   3'- -CCGGUg----CGUUGU-CGGUGaCCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 56784 0.76 0.266096
Target:  5'- aGGCCuccucggugaGCGCGGCGGCCGuCUGGcGGGCGg -3'
miRNA:   3'- -CCGG----------UGCGUUGUCGGU-GACC-CUCGUa -5'
28886 5' -58.3 NC_006146.1 + 15273 0.75 0.334918
Target:  5'- gGGCCAUGCAGCGGCUGaaccGGAGCGa -3'
miRNA:   3'- -CCGGUGCGUUGUCGGUgac-CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 72575 0.74 0.340195
Target:  5'- gGGCCGCGCccggccccgugccaGACGGCCAC--GGAGCAc -3'
miRNA:   3'- -CCGGUGCG--------------UUGUCGGUGacCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 17701 0.74 0.382078
Target:  5'- cGGCC-CGUGGCGGCCAagcgcCUGGGGGaCGUa -3'
miRNA:   3'- -CCGGuGCGUUGUCGGU-----GACCCUC-GUA- -5'
28886 5' -58.3 NC_006146.1 + 41048 0.73 0.390356
Target:  5'- cGUC-CGCGGCGGCC-CUGGGGGCc- -3'
miRNA:   3'- cCGGuGCGUUGUCGGuGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 122812 0.73 0.398751
Target:  5'- aGGCCGCGCuguCGGCCGCcGuGAGCGa -3'
miRNA:   3'- -CCGGUGCGuu-GUCGGUGaCcCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 128853 0.72 0.451458
Target:  5'- cGGCCAgGCAcaggaAgGGCCACgaagaGGGGGCGg -3'
miRNA:   3'- -CCGGUgCGU-----UgUCGGUGa----CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 45511 0.72 0.460609
Target:  5'- uGGCCAa--GACGGCCACggUGGGGGCc- -3'
miRNA:   3'- -CCGGUgcgUUGUCGGUG--ACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 127490 0.72 0.476389
Target:  5'- cGCCAUGCAGCGGCgCguguuucccaagcaGCUGaGGGGCAa -3'
miRNA:   3'- cCGGUGCGUUGUCG-G--------------UGAC-CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 62217 0.72 0.479201
Target:  5'- aGCCcuGCGCcGCAGCCuCUGGGcGCAg -3'
miRNA:   3'- cCGG--UGCGuUGUCGGuGACCCuCGUa -5'
28886 5' -58.3 NC_006146.1 + 96442 0.72 0.488634
Target:  5'- aGGCCAU-CGugGGCCA-UGGGGGCAg -3'
miRNA:   3'- -CCGGUGcGUugUCGGUgACCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 82062 0.71 0.517434
Target:  5'- uGGCCAC-CAAgGGCCugcuucagguGCUGGGAGUc- -3'
miRNA:   3'- -CCGGUGcGUUgUCGG----------UGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 18239 0.71 0.527186
Target:  5'- cGGCCugGgGgagcucauggACAGCCug-GGGAGCGUg -3'
miRNA:   3'- -CCGGugCgU----------UGUCGGugaCCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 103696 0.71 0.531106
Target:  5'- cGGCCAgGCGAcCGGCCACgGccaguggaaucccaaGGAGCAg -3'
miRNA:   3'- -CCGGUgCGUU-GUCGGUGaC---------------CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 124458 0.7 0.566817
Target:  5'- cGGCCuACGCcGCcGCCuucCUGGGGGCc- -3'
miRNA:   3'- -CCGG-UGCGuUGuCGGu--GACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 55684 0.7 0.576853
Target:  5'- aGGCCA-GCAcgggcACGGCCGCcgccgGGGGGCu- -3'
miRNA:   3'- -CCGGUgCGU-----UGUCGGUGa----CCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 49482 0.7 0.576853
Target:  5'- gGGCCGCGguGuCGGCCAg-GGGcGGCGUg -3'
miRNA:   3'- -CCGGUGCguU-GUCGGUgaCCC-UCGUA- -5'
28886 5' -58.3 NC_006146.1 + 59761 0.7 0.586927
Target:  5'- aGGCCAgcCGCc-CGGCCAcCUGGGGGUu- -3'
miRNA:   3'- -CCGGU--GCGuuGUCGGU-GACCCUCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.