miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 5' -58.3 NC_006146.1 + 319 0.68 0.71812
Target:  5'- cGCCACGCccAGCugucauucucccGGCCAacGGGAGCAg -3'
miRNA:   3'- cCGGUGCG--UUG------------UCGGUgaCCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 391 0.66 0.820229
Target:  5'- aGGCCcCGCccGCcGCgCGCUGGGGGUc- -3'
miRNA:   3'- -CCGGuGCGu-UGuCG-GUGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 1236 0.68 0.722059
Target:  5'- gGGCCACGCGcgcccgccacgcccaGCuGUCAUUcuccccgccaacGGGAGCAg -3'
miRNA:   3'- -CCGGUGCGU---------------UGuCGGUGA------------CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 2168 0.68 0.722059
Target:  5'- gGGCCACGCGcgcccgccacgcccaGCuGUCAUUcuccccgccaacGGGAGCAg -3'
miRNA:   3'- -CCGGUGCGU---------------UGuCGGUGA------------CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 3100 0.68 0.722059
Target:  5'- gGGCCACGCGcgcccgccacgcccaGCuGUCAUUcuccccgccaacGGGAGCAg -3'
miRNA:   3'- -CCGGUGCGU---------------UGuCGGUGA------------CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 12713 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 14850 0.69 0.617317
Target:  5'- gGGCCGCGgGaggccgaggggGCAGCCA--GGGAGCu- -3'
miRNA:   3'- -CCGGUGCgU-----------UGUCGGUgaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 15273 0.75 0.334918
Target:  5'- gGGCCAUGCAGCGGCUGaaccGGAGCGa -3'
miRNA:   3'- -CCGGUGCGUUGUCGGUgac-CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 15792 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 17701 0.74 0.382078
Target:  5'- cGGCC-CGUGGCGGCCAagcgcCUGGGGGaCGUa -3'
miRNA:   3'- -CCGGuGCGUUGUCGGU-----GACCCUC-GUA- -5'
28886 5' -58.3 NC_006146.1 + 18239 0.71 0.527186
Target:  5'- cGGCCugGgGgagcucauggACAGCCug-GGGAGCGUg -3'
miRNA:   3'- -CCGGugCgU----------UGUCGGugaCCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 18870 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 24075 0.67 0.747342
Target:  5'- gGGCUcuACGCuggcGCGGCCucgcCUGGGAcGCGg -3'
miRNA:   3'- -CCGG--UGCGu---UGUCGGu---GACCCU-CGUa -5'
28886 5' -58.3 NC_006146.1 + 25025 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 27350 0.68 0.668082
Target:  5'- gGGUgGCGCGGCaaGGCCg--GGGGGCGUc -3'
miRNA:   3'- -CCGgUGCGUUG--UCGGugaCCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 28103 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 28761 1.08 0.001968
Target:  5'- gGGCCACGCAACAGCCACUGGGAGCAUa -3'
miRNA:   3'- -CCGGUGCGUUGUCGGUGACCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 30156 0.67 0.731853
Target:  5'- uGGCCACGCAuccgagagcgGCaaccccugcaccuugGGCaCAUUGaGGAGCAg -3'
miRNA:   3'- -CCGGUGCGU----------UG---------------UCG-GUGAC-CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 30339 0.67 0.76634
Target:  5'- uGCCACGCGgugGCAGCCuaugacgaAUUGGGGuGCc- -3'
miRNA:   3'- cCGGUGCGU---UGUCGG--------UGACCCU-CGua -5'
28886 5' -58.3 NC_006146.1 + 31862 0.68 0.69826
Target:  5'- gGGuCCACGCuuCcGCCcCUGGGAuGCGg -3'
miRNA:   3'- -CC-GGUGCGuuGuCGGuGACCCU-CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.