miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 5' -58.3 NC_006146.1 + 56784 0.76 0.266096
Target:  5'- aGGCCuccucggugaGCGCGGCGGCCGuCUGGcGGGCGg -3'
miRNA:   3'- -CCGG----------UGCGUUGUCGGU-GACC-CUCGUa -5'
28886 5' -58.3 NC_006146.1 + 34241 0.68 0.688244
Target:  5'- aGGCCGcCGCAaggacGCcgGGCCgGCUGGGGGUu- -3'
miRNA:   3'- -CCGGU-GCGU-----UG--UCGG-UGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 115186 0.68 0.69826
Target:  5'- aGGCCugG-GACAGCCGuCUGGcGGUAg -3'
miRNA:   3'- -CCGGugCgUUGUCGGU-GACCcUCGUa -5'
28886 5' -58.3 NC_006146.1 + 147277 0.66 0.828669
Target:  5'- aGGCgACGCAggcuagucuuuAUGGUUACaaacaUGGGAGCGUg -3'
miRNA:   3'- -CCGgUGCGU-----------UGUCGGUG-----ACCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 62217 0.72 0.479201
Target:  5'- aGCCcuGCGCcGCAGCCuCUGGGcGCAg -3'
miRNA:   3'- cCGG--UGCGuUGUCGGuGACCCuCGUa -5'
28886 5' -58.3 NC_006146.1 + 96442 0.72 0.488634
Target:  5'- aGGCCAU-CGugGGCCA-UGGGGGCAg -3'
miRNA:   3'- -CCGGUGcGUugUCGGUgACCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 49482 0.7 0.576853
Target:  5'- gGGCCGCGguGuCGGCCAg-GGGcGGCGUg -3'
miRNA:   3'- -CCGGUGCguU-GUCGGUgaCCC-UCGUA- -5'
28886 5' -58.3 NC_006146.1 + 167529 0.7 0.597034
Target:  5'- gGGCCGCGCcccCGGCCccucucCUGGGAGg-- -3'
miRNA:   3'- -CCGGUGCGuu-GUCGGu-----GACCCUCgua -5'
28886 5' -58.3 NC_006146.1 + 170324 0.7 0.597034
Target:  5'- gGGCCGCGCcccCGGCCccucucCUGGGAGg-- -3'
miRNA:   3'- -CCGGUGCGuu-GUCGGu-----GACCCUCgua -5'
28886 5' -58.3 NC_006146.1 + 53799 0.68 0.668082
Target:  5'- cGGcCCGCGCGGCGuCCAUagcgGGGGGCu- -3'
miRNA:   3'- -CC-GGUGCGUUGUcGGUGa---CCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 67014 0.69 0.647805
Target:  5'- uGGCC-CGgGugAGCCGCguguccGGGAGCc- -3'
miRNA:   3'- -CCGGuGCgUugUCGGUGa-----CCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 169393 0.7 0.597034
Target:  5'- gGGCCGCGCcccCGGCCccucucCUGGGAGg-- -3'
miRNA:   3'- -CCGGUGCGuu-GUCGGu-----GACCCUCgua -5'
28886 5' -58.3 NC_006146.1 + 128853 0.72 0.451458
Target:  5'- cGGCCAgGCAcaggaAgGGCCACgaagaGGGGGCGg -3'
miRNA:   3'- -CCGGUgCGU-----UgUCGGUGa----CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 44190 0.69 0.657954
Target:  5'- aGGCaCGCGCGGCuGCacugcaGCcGGGGGCGg -3'
miRNA:   3'- -CCG-GUGCGUUGuCGg-----UGaCCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 45511 0.72 0.460609
Target:  5'- uGGCCAa--GACGGCCACggUGGGGGCc- -3'
miRNA:   3'- -CCGGUgcgUUGUCGGUG--ACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 168461 0.7 0.597034
Target:  5'- gGGCCGCGCcccCGGCCccucucCUGGGAGg-- -3'
miRNA:   3'- -CCGGUGCGuu-GUCGGu-----GACCCUCgua -5'
28886 5' -58.3 NC_006146.1 + 43321 0.69 0.657954
Target:  5'- cGGCCgGCGCGGCcucGGCCGCccaGGGccAGCAg -3'
miRNA:   3'- -CCGG-UGCGUUG---UCGGUGa--CCC--UCGUa -5'
28886 5' -58.3 NC_006146.1 + 138071 0.68 0.688244
Target:  5'- aGGCCGcCGCAaggacGCcgGGCCgGCUGGGGGUu- -3'
miRNA:   3'- -CCGGU-GCGU-----UG--UCGG-UGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 127490 0.72 0.476389
Target:  5'- cGCCAUGCAGCGGCgCguguuucccaagcaGCUGaGGGGCAa -3'
miRNA:   3'- cCGGUGCGUUGUCG-G--------------UGAC-CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 55684 0.7 0.576853
Target:  5'- aGGCCA-GCAcgggcACGGCCGCcgccgGGGGGCu- -3'
miRNA:   3'- -CCGGUgCGU-----UGUCGGUGa----CCCUCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.