Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 29221 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 19987 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 23065 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 123922 | 0.66 | 0.993742 |
Target: 5'- -aCGGGCGCaauuccuggcggcgGCCGGGCCGg-CGAa -3' miRNA: 3'- uaGUUCGCG--------------UGGUCUGGCagGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 26143 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 98309 | 0.66 | 0.994017 |
Target: 5'- --aGGGCGUGCUccguGGCCGUCUGGc -3' miRNA: 3'- uagUUCGCGUGGu---CUGGCAGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 30673 | 0.66 | 0.994864 |
Target: 5'- cGUCAA-CGCuguccacCCAGGCCcuGUCCGAu -3' miRNA: 3'- -UAGUUcGCGu------GGUCUGG--CAGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 18837 | 0.66 | 0.994864 |
Target: 5'- -cCAAGUGCuuCCAGACC--CCGGg -3' miRNA: 3'- uaGUUCGCGu-GGUCUGGcaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 90826 | 0.66 | 0.994017 |
Target: 5'- -cCAGGCGCugUgcugGGACCGcgUUCGAg -3' miRNA: 3'- uaGUUCGCGugG----UCUGGC--AGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 16910 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 13832 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 152660 | 0.66 | 0.994017 |
Target: 5'- -cCAGGCuguccaugaGCucccCCAGGCCGUCCa- -3' miRNA: 3'- uaGUUCG---------CGu---GGUCUGGCAGGcu -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 58426 | 0.66 | 0.989447 |
Target: 5'- --uGAGCGCGCCGGGgUggGUCUGGg -3' miRNA: 3'- uagUUCGCGUGGUCUgG--CAGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 22949 | 0.66 | 0.990786 |
Target: 5'- cUCucGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGu-UCGcGUGGUCUGGCaGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 114571 | 0.66 | 0.990786 |
Target: 5'- aAUCuuGGUcaGCAUCAGGCUGUCCa- -3' miRNA: 3'- -UAGu-UCG--CGUGGUCUGGCAGGcu -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 111762 | 0.66 | 0.991988 |
Target: 5'- cUgAGGCGgGCCAGcagaaACCGUCCc- -3' miRNA: 3'- uAgUUCGCgUGGUC-----UGGCAGGcu -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 131086 | 0.66 | 0.993062 |
Target: 5'- --gAGGC-CGCCGGGCCGUCa-- -3' miRNA: 3'- uagUUCGcGUGGUCUGGCAGgcu -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 54024 | 0.66 | 0.994017 |
Target: 5'- -gCAGGCacugcuGCGCCuGGCCGggCCGGa -3' miRNA: 3'- uaGUUCG------CGUGGuCUGGCa-GGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 126949 | 0.67 | 0.987961 |
Target: 5'- ---uGGCGCucuCCGGGCgCGUCUGGa -3' miRNA: 3'- uaguUCGCGu--GGUCUG-GCAGGCU- -5' |
|||||||
28889 | 5' | -50.3 | NC_006146.1 | + | 52649 | 0.67 | 0.982521 |
Target: 5'- cUCuGGCGCAUgAGGgCGUCCa- -3' miRNA: 3'- uAGuUCGCGUGgUCUgGCAGGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home