miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28891 3' -46.9 NC_006146.1 + 135953 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135675 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135767 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135860 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 95662 0.66 0.999854
Target:  5'- --cCCACGCCCGccucggucagGCUCUuugagauccuGCAGGGc -3'
miRNA:   3'- uuuGGUGUGGGUa---------UGAGA----------UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 151494 0.66 0.999854
Target:  5'- aAGAUCugGCACCCGUGCUugucCUGCAGc- -3'
miRNA:   3'- -UUUGG--UGUGGGUAUGA----GAUGUCcu -5'
28891 3' -46.9 NC_006146.1 + 30890 0.66 0.999854
Target:  5'- aGAACCugACCCccGCg--AUAGGAa -3'
miRNA:   3'- -UUUGGugUGGGuaUGagaUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135210 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135303 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135582 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135489 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 122312 0.66 0.99981
Target:  5'- -uGCCACcCCCAUcgucugGCUCUugugcCAGGGg -3'
miRNA:   3'- uuUGGUGuGGGUA------UGAGAu----GUCCU- -5'
28891 3' -46.9 NC_006146.1 + 160602 0.66 0.99981
Target:  5'- --uCCACAgCCuUGCUCUuguuuucacACGGGAg -3'
miRNA:   3'- uuuGGUGUgGGuAUGAGA---------UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 9484 0.66 0.999592
Target:  5'- gGGGCCACACCCGccuggcacaggccUAUgaUCUGCAGc- -3'
miRNA:   3'- -UUUGGUGUGGGU-------------AUG--AGAUGUCcu -5'
28891 3' -46.9 NC_006146.1 + 69941 0.66 0.999602
Target:  5'- uGAGCCGC-CCCGcGCUggcCUGCuGGAa -3'
miRNA:   3'- -UUUGGUGuGGGUaUGA---GAUGuCCU- -5'
28891 3' -46.9 NC_006146.1 + 65464 0.66 0.999687
Target:  5'- cGACCACGCUgGcggGCUgUGCGGGu -3'
miRNA:   3'- uUUGGUGUGGgUa--UGAgAUGUCCu -5'
28891 3' -46.9 NC_006146.1 + 147583 0.66 0.999687
Target:  5'- aGGGCCAUACUCGcGCUCaGguGGAc -3'
miRNA:   3'- -UUUGGUGUGGGUaUGAGaUguCCU- -5'
28891 3' -46.9 NC_006146.1 + 164310 0.66 0.999687
Target:  5'- gGGGCCACugCCGuUGCUgUuguCGGGGu -3'
miRNA:   3'- -UUUGGUGugGGU-AUGAgAu--GUCCU- -5'
28891 3' -46.9 NC_006146.1 + 102119 0.66 0.999755
Target:  5'- -uGCCAucCACCCAgccuuUUUUGCAGGGc -3'
miRNA:   3'- uuUGGU--GUGGGUau---GAGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 4440 0.66 0.999755
Target:  5'- aAAGCgGC-CUCGUGCUCU-CGGGGc -3'
miRNA:   3'- -UUUGgUGuGGGUAUGAGAuGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.