Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28891 | 3' | -46.9 | NC_006146.1 | + | 319 | 0.7 | 0.990768 |
Target: 5'- -cGCCACGCCCAgcugucAUUCUcccggccaACGGGAg -3' miRNA: 3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 1250 | 0.7 | 0.990768 |
Target: 5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3' miRNA: 3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 2182 | 0.7 | 0.990768 |
Target: 5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3' miRNA: 3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 3114 | 0.7 | 0.990768 |
Target: 5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3' miRNA: 3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 4440 | 0.66 | 0.999755 |
Target: 5'- aAAGCgGC-CUCGUGCUCU-CGGGGc -3' miRNA: 3'- -UUUGgUGuGGGUAUGAGAuGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 8730 | 0.71 | 0.986147 |
Target: 5'- gGGACCGuggauaGCCUAUGCuaUCUACAGGGu -3' miRNA: 3'- -UUUGGUg-----UGGGUAUG--AGAUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 8793 | 0.7 | 0.990768 |
Target: 5'- --cCCACAuCCCAUACUCcuggucaggUugGGGAg -3' miRNA: 3'- uuuGGUGU-GGGUAUGAG---------AugUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 9484 | 0.66 | 0.999592 |
Target: 5'- gGGGCCACACCCGccuggcacaggccUAUgaUCUGCAGc- -3' miRNA: 3'- -UUUGGUGUGGGU-------------AUG--AGAUGUCcu -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 13106 | 0.66 | 0.999602 |
Target: 5'- cGGACCugGCCCuguUugUggACGGGGg -3' miRNA: 3'- -UUUGGugUGGGu--AugAgaUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 24063 | 0.73 | 0.961644 |
Target: 5'- cGAGCCAgGCCCGgGCUCUACGcuGGc -3' miRNA: 3'- -UUUGGUgUGGGUaUGAGAUGU--CCu -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 25783 | 0.66 | 0.99981 |
Target: 5'- aGAGCCugGCCCAgGCcuucuucaUCUACgccgGGGAc -3' miRNA: 3'- -UUUGGugUGGGUaUG--------AGAUG----UCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 27732 | 1.06 | 0.028053 |
Target: 5'- aAAACCACACCCAUACUCUACAGGAc -3' miRNA: 3'- -UUUGGUGUGGGUAUGAGAUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 29962 | 0.68 | 0.998017 |
Target: 5'- aGGACCACugCCAguaaacacucaggaACUCcaGCAGGAa -3' miRNA: 3'- -UUUGGUGugGGUa-------------UGAGa-UGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 30890 | 0.66 | 0.999854 |
Target: 5'- aGAACCugACCCccGCg--AUAGGAa -3' miRNA: 3'- -UUUGGugUGGGuaUGagaUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 33552 | 0.68 | 0.998807 |
Target: 5'- -uGCCugGCCCugGUGCUCcucCGGGGg -3' miRNA: 3'- uuUGGugUGGG--UAUGAGau-GUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 35967 | 0.68 | 0.998807 |
Target: 5'- aGAAUCACcCuCCAgccuCUCUGCGGGGg -3' miRNA: 3'- -UUUGGUGuG-GGUau--GAGAUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 36179 | 0.68 | 0.997863 |
Target: 5'- uGGCCugguGCAUgCAUGC-CUGCAGGAc -3' miRNA: 3'- uUUGG----UGUGgGUAUGaGAUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 52451 | 0.68 | 0.997863 |
Target: 5'- uGGGCCAC-CCCGUugUagccgccgUGCAGGAc -3' miRNA: 3'- -UUUGGUGuGGGUAugAg-------AUGUCCU- -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 54111 | 0.74 | 0.922769 |
Target: 5'- -cACCACGCCCuugaGCgUCUGCAGGu -3' miRNA: 3'- uuUGGUGUGGGua--UG-AGAUGUCCu -5' |
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28891 | 3' | -46.9 | NC_006146.1 | + | 58591 | 0.73 | 0.961644 |
Target: 5'- cAGACCAgCGCCaAUACaUCUACGGGGg -3' miRNA: 3'- -UUUGGU-GUGGgUAUG-AGAUGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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