miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28891 3' -46.9 NC_006146.1 + 143133 0.68 0.998807
Target:  5'- gAGACC-CACCCuu-CUCgACGGGGc -3'
miRNA:   3'- -UUUGGuGUGGGuauGAGaUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 129484 0.68 0.997434
Target:  5'- aGAGCCGCccACCCAgcgcggccgucUACgUCUGCGGGu -3'
miRNA:   3'- -UUUGGUG--UGGGU-----------AUG-AGAUGUCCu -5'
28891 3' -46.9 NC_006146.1 + 36179 0.68 0.997863
Target:  5'- uGGCCugguGCAUgCAUGC-CUGCAGGAc -3'
miRNA:   3'- uUUGG----UGUGgGUAUGaGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 52451 0.68 0.997863
Target:  5'- uGGGCCAC-CCCGUugUagccgccgUGCAGGAc -3'
miRNA:   3'- -UUUGGUGuGGGUAugAg-------AUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 106318 0.68 0.99823
Target:  5'- aGGGCCAguuccagacacUGCCCAUAC-CUGCGGGc -3'
miRNA:   3'- -UUUGGU-----------GUGGGUAUGaGAUGUCCu -5'
28891 3' -46.9 NC_006146.1 + 82272 0.68 0.998543
Target:  5'- aAGGCCAUGCcgauuCCAUACUUgggaUACAGGGa -3'
miRNA:   3'- -UUUGGUGUG-----GGUAUGAG----AUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 33552 0.68 0.998807
Target:  5'- -uGCCugGCCCugGUGCUCcucCGGGGg -3'
miRNA:   3'- uuUGGugUGGG--UAUGAGau-GUCCU- -5'
28891 3' -46.9 NC_006146.1 + 35967 0.68 0.998807
Target:  5'- aGAAUCACcCuCCAgccuCUCUGCGGGGg -3'
miRNA:   3'- -UUUGGUGuG-GGUau--GAGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 61335 0.68 0.998807
Target:  5'- cGACCAUGCCCAgACUCaucucaaGGGAg -3'
miRNA:   3'- uUUGGUGUGGGUaUGAGaug----UCCU- -5'
28891 3' -46.9 NC_006146.1 + 152642 0.68 0.997434
Target:  5'- uAACCugACCCAcGCUCccCAGGc -3'
miRNA:   3'- uUUGGugUGGGUaUGAGauGUCCu -5'
28891 3' -46.9 NC_006146.1 + 127397 0.68 0.997434
Target:  5'- cAGCCugGCCCGgACcCUACuGGGAa -3'
miRNA:   3'- uUUGGugUGGGUaUGaGAUG-UCCU- -5'
28891 3' -46.9 NC_006146.1 + 98385 0.69 0.996936
Target:  5'- aGAGCCGCAgCCGUccGCUCcuccGCAGGc -3'
miRNA:   3'- -UUUGGUGUgGGUA--UGAGa---UGUCCu -5'
28891 3' -46.9 NC_006146.1 + 130462 0.73 0.953565
Target:  5'- -uGCCGCACCC--GC-CUACGGGGc -3'
miRNA:   3'- uuUGGUGUGGGuaUGaGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 153499 0.73 0.957736
Target:  5'- uGGCCGCugCCGUGCuUCUGgAGGc -3'
miRNA:   3'- uUUGGUGugGGUAUG-AGAUgUCCu -5'
28891 3' -46.9 NC_006146.1 + 89136 0.72 0.974765
Target:  5'- gAGACCggGCGgCCAUGCUCUcaugcaacgcGCAGGGg -3'
miRNA:   3'- -UUUGG--UGUgGGUAUGAGA----------UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 8730 0.71 0.986147
Target:  5'- gGGACCGuggauaGCCUAUGCuaUCUACAGGGu -3'
miRNA:   3'- -UUUGGUg-----UGGGUAUG--AGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 100741 0.7 0.990768
Target:  5'- -cACCACcucaccCCCAUGCUCUAUcuGGAg -3'
miRNA:   3'- uuUGGUGu-----GGGUAUGAGAUGu-CCU- -5'
28891 3' -46.9 NC_006146.1 + 8793 0.7 0.990768
Target:  5'- --cCCACAuCCCAUACUCcuggucaggUugGGGAg -3'
miRNA:   3'- uuuGGUGU-GGGUAUGAG---------AugUCCU- -5'
28891 3' -46.9 NC_006146.1 + 82385 0.69 0.994941
Target:  5'- --uCCACACCCGgg--UUACAGGGa -3'
miRNA:   3'- uuuGGUGUGGGUaugaGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 106053 0.69 0.99636
Target:  5'- cGAGCCcuucuGCACCUgaggcgGCUCUGCGGGu -3'
miRNA:   3'- -UUUGG-----UGUGGGua----UGAGAUGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.