miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28891 3' -46.9 NC_006146.1 + 27732 1.06 0.028053
Target:  5'- aAAACCACACCCAUACUCUACAGGAc -3'
miRNA:   3'- -UUUGGUGUGGGUAUGAGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 54111 0.74 0.922769
Target:  5'- -cACCACGCCCuugaGCgUCUGCAGGu -3'
miRNA:   3'- uuUGGUGUGGGua--UG-AGAUGUCCu -5'
28891 3' -46.9 NC_006146.1 + 130462 0.73 0.953565
Target:  5'- -uGCCGCACCC--GC-CUACGGGGc -3'
miRNA:   3'- uuUGGUGUGGGuaUGaGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 153499 0.73 0.957736
Target:  5'- uGGCCGCugCCGUGCuUCUGgAGGc -3'
miRNA:   3'- uUUGGUGugGGUAUG-AGAUgUCCu -5'
28891 3' -46.9 NC_006146.1 + 58591 0.73 0.961644
Target:  5'- cAGACCAgCGCCaAUACaUCUACGGGGg -3'
miRNA:   3'- -UUUGGU-GUGGgUAUG-AGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 24063 0.73 0.961644
Target:  5'- cGAGCCAgGCCCGgGCUCUACGcuGGc -3'
miRNA:   3'- -UUUGGUgUGGGUaUGAGAUGU--CCu -5'
28891 3' -46.9 NC_006146.1 + 89136 0.72 0.974765
Target:  5'- gAGACCggGCGgCCAUGCUCUcaugcaacgcGCAGGGg -3'
miRNA:   3'- -UUUGG--UGUgGGUAUGAGA----------UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 75774 0.71 0.979932
Target:  5'- cGGACCAaGCCCAggggGCUCUACucGGGc -3'
miRNA:   3'- -UUUGGUgUGGGUa---UGAGAUGu-CCU- -5'
28891 3' -46.9 NC_006146.1 + 158520 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 143129 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 146207 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 152363 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 149285 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 155441 0.71 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
28891 3' -46.9 NC_006146.1 + 8730 0.71 0.986147
Target:  5'- gGGACCGuggauaGCCUAUGCuaUCUACAGGGu -3'
miRNA:   3'- -UUUGGUg-----UGGGUAUG--AGAUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 166725 0.71 0.987851
Target:  5'- -cGCCGaGCCCGU-CUCgggGCAGGAg -3'
miRNA:   3'- uuUGGUgUGGGUAuGAGa--UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136976 0.7 0.988792
Target:  5'- cGGACCGCACCCAccggaccggaggaGCUCcaggACGGGGg -3'
miRNA:   3'- -UUUGGUGUGGGUa------------UGAGa---UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 105785 0.7 0.989387
Target:  5'- -cACCaggGCACCCAggGCUCccagACGGGAa -3'
miRNA:   3'- uuUGG---UGUGGGUa-UGAGa---UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 8793 0.7 0.990768
Target:  5'- --cCCACAuCCCAUACUCcuggucaggUugGGGAg -3'
miRNA:   3'- uuuGGUGU-GGGUAUGAG---------AugUCCU- -5'
28891 3' -46.9 NC_006146.1 + 100741 0.7 0.990768
Target:  5'- -cACCACcucaccCCCAUGCUCUAUcuGGAg -3'
miRNA:   3'- uuUGGUGu-----GGGUAUGAGAUGu-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.