Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 170386 | 0.66 | 0.999896 |
Target: 5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3' miRNA: 3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 169952 | 0.66 | 0.999865 |
Target: 5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3' miRNA: 3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 169455 | 0.66 | 0.999896 |
Target: 5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3' miRNA: 3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 169020 | 0.66 | 0.999865 |
Target: 5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3' miRNA: 3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 168905 | 0.66 | 0.999858 |
Target: 5'- -cGCAGCgCGACUgucagcagguucUCGGAGACGAGGg -3' miRNA: 3'- acUGUCG-GCUGGa-----------AGCUUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 168523 | 0.66 | 0.999896 |
Target: 5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3' miRNA: 3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 168088 | 0.66 | 0.999865 |
Target: 5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3' miRNA: 3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 167591 | 0.66 | 0.999896 |
Target: 5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3' miRNA: 3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 167156 | 0.66 | 0.999865 |
Target: 5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3' miRNA: 3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 166523 | 0.67 | 0.999434 |
Target: 5'- aUGGC-GUCGGCCUggGGAGcccGCGggGCc -3' miRNA: 3'- -ACUGuCGGCUGGAagCUUU---UGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 164092 | 0.67 | 0.999298 |
Target: 5'- cGuCAGCCGuCCUgauucCGAGAAgGAAAa -3' miRNA: 3'- aCuGUCGGCuGGAa----GCUUUUgCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 159892 | 0.66 | 0.999826 |
Target: 5'- aGAgGGCCucgaggccggGGCCcUCGAAGAUGggGg -3' miRNA: 3'- aCUgUCGG----------CUGGaAGCUUUUGCuuUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 158828 | 0.66 | 0.999896 |
Target: 5'- cGGCcggGGcCCGGCCcUCGcAAAGCGAGcACa -3' miRNA: 3'- aCUG---UC-GGCUGGaAGC-UUUUGCUU-UG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 157845 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 157357 | 0.68 | 0.99774 |
Target: 5'- ---uGGCCGGgCgggCGggGACGggGCu -3' miRNA: 3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 156859 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 154767 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 154279 | 0.68 | 0.99774 |
Target: 5'- ---uGGCCGGgCgggCGggGACGggGCu -3' miRNA: 3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 153781 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 151201 | 0.68 | 0.99774 |
Target: 5'- ---uGGCCGGgCgggCGggGACGggGCu -3' miRNA: 3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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