miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 115446 0.66 0.94295
Target:  5'- --gGCCAuCGAGCGGGUggccacgguacuGCUGuCGGCg -3'
miRNA:   3'- cagUGGUuGUUCGUCCA------------CGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 72511 0.66 0.94295
Target:  5'- -gCGCCugcgGAgGAGCGGacgGCUGCGGCUc -3'
miRNA:   3'- caGUGG----UUgUUCGUCca-CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 14974 0.66 0.94295
Target:  5'- ---uUCAACGGGCaAGGgagaggGCUGCGGCc -3'
miRNA:   3'- caguGGUUGUUCG-UCCa-----CGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 59640 0.66 0.933117
Target:  5'- gGUCACCAACAAGgAGGaagcGCUcaGGCc -3'
miRNA:   3'- -CAGUGGUUGUUCgUCCa---CGAcgUCGa -5'
28896 3' -54.5 NC_006146.1 + 108394 0.66 0.933117
Target:  5'- -aCACgCAGCcccccaGGGcCAGGUGCUGCuGGCa -3'
miRNA:   3'- caGUG-GUUG------UUC-GUCCACGACG-UCGa -5'
28896 3' -54.5 NC_006146.1 + 115006 0.66 0.933117
Target:  5'- aUgGCCGugGAGCuGGUGgaGCGGg- -3'
miRNA:   3'- cAgUGGUugUUCGuCCACgaCGUCga -5'
28896 3' -54.5 NC_006146.1 + 62605 0.66 0.927823
Target:  5'- -cCGCCGcagGCAaugAGCGGGaGCUGCuGCg -3'
miRNA:   3'- caGUGGU---UGU---UCGUCCaCGACGuCGa -5'
28896 3' -54.5 NC_006146.1 + 54683 0.66 0.927823
Target:  5'- -cCGCCGACAAGCGGacGgaGCAGaCUg -3'
miRNA:   3'- caGUGGUUGUUCGUCcaCgaCGUC-GA- -5'
28896 3' -54.5 NC_006146.1 + 40543 0.66 0.927823
Target:  5'- gGUCugCAGCAGGgucaugaAGGUGgUGCGGg- -3'
miRNA:   3'- -CAGugGUUGUUCg------UCCACgACGUCga -5'
28896 3' -54.5 NC_006146.1 + 61755 0.66 0.927823
Target:  5'- -gCAUCugauUggGCAGGUGCUGCugauGCc -3'
miRNA:   3'- caGUGGuu--GuuCGUCCACGACGu---CGa -5'
28896 3' -54.5 NC_006146.1 + 111001 0.66 0.921709
Target:  5'- -gCACCAGCAGGUuggccAGcGUGCUggcccgcGCGGCg -3'
miRNA:   3'- caGUGGUUGUUCG-----UC-CACGA-------CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 166654 0.66 0.91648
Target:  5'- -aCGCCAgaGCGAGCGGGaagggGgaGCGGUg -3'
miRNA:   3'- caGUGGU--UGUUCGUCCa----CgaCGUCGa -5'
28896 3' -54.5 NC_006146.1 + 42752 0.66 0.91648
Target:  5'- aUCGCCugcggcAGCAGGgccgaCAGGUGCagGCGGCg -3'
miRNA:   3'- cAGUGG------UUGUUC-----GUCCACGa-CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 104456 0.66 0.91648
Target:  5'- -gCGCCcuC-GGCAGGcaGCUGCGGCUc -3'
miRNA:   3'- caGUGGuuGuUCGUCCa-CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 115652 0.67 0.909192
Target:  5'- -cCGCCAccCGGGCGGGggucaugguggaGCUGUAGCUg -3'
miRNA:   3'- caGUGGUu-GUUCGUCCa-----------CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 50174 0.67 0.908569
Target:  5'- cGUCACgAugGGGgugaucucccggauCAGGUGCUGCuccAGCg -3'
miRNA:   3'- -CAGUGgUugUUC--------------GUCCACGACG---UCGa -5'
28896 3' -54.5 NC_006146.1 + 142537 0.67 0.904134
Target:  5'- --aACCAugGAGguGGuUGCggUGCAGCc -3'
miRNA:   3'- cagUGGUugUUCguCC-ACG--ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 39759 0.67 0.904134
Target:  5'- gGUguCCAGCAgaucgcagacgcGGCAGGUGCUG--GCUg -3'
miRNA:   3'- -CAguGGUUGU------------UCGUCCACGACguCGA- -5'
28896 3' -54.5 NC_006146.1 + 64667 0.67 0.904134
Target:  5'- cGUCGCCGu--GGUAGGUGgucucCUGUAGCc -3'
miRNA:   3'- -CAGUGGUuguUCGUCCAC-----GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 10976 0.67 0.89759
Target:  5'- aGUCACCua-AAGCAGGcggcGCUGcCGGUg -3'
miRNA:   3'- -CAGUGGuugUUCGUCCa---CGAC-GUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.