miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 47819 0.66 0.843293
Target:  5'- cGAGAaaaGCUGCuaaaCAUGGCC-CCGCa -3'
miRNA:   3'- cUUCU---UGACGucg-GUACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 128792 0.66 0.843293
Target:  5'- aGAGGccCUcGUAGUCGUGcGCCGuCCGCg -3'
miRNA:   3'- -CUUCuuGA-CGUCGGUAC-CGGC-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 55709 0.66 0.843293
Target:  5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3'
miRNA:   3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 163213 0.66 0.842486
Target:  5'- aGAGGAGCcggGCAgGCCGUaGGCaggguagCGCUGCUc -3'
miRNA:   3'- -CUUCUUGa--CGU-CGGUA-CCG-------GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 115646 0.66 0.835133
Target:  5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3'
miRNA:   3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5'
28897 5' -57.8 NC_006146.1 + 152278 0.66 0.835133
Target:  5'- uGGAGugcuCUGCuGGCCAccgaagguuUGGUCGcCCGCUg -3'
miRNA:   3'- -CUUCuu--GACG-UCGGU---------ACCGGC-GGCGA- -5'
28897 5' -57.8 NC_006146.1 + 53162 0.66 0.835133
Target:  5'- ---cGACUGCGGCgGUGGCCGgaagGCUc -3'
miRNA:   3'- cuucUUGACGUCGgUACCGGCgg--CGA- -5'
28897 5' -57.8 NC_006146.1 + 125094 0.66 0.826789
Target:  5'- --cGAg--GCGGCCGUGGCgGCgGCc -3'
miRNA:   3'- cuuCUugaCGUCGGUACCGgCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 92203 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92054 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 106023 0.66 0.826789
Target:  5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3'
miRNA:   3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 105608 0.66 0.826789
Target:  5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3'
miRNA:   3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 158410 0.66 0.826789
Target:  5'- cGAGuACUGCAGCaCGUGGuaGCaGCUc -3'
miRNA:   3'- cUUCuUGACGUCG-GUACCggCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 98383 0.66 0.825945
Target:  5'- cGAGAGCcGCAGCCGUccgcuccuccgcaGGC-GCUGCa -3'
miRNA:   3'- cUUCUUGaCGUCGGUA-------------CCGgCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 42996 0.66 0.819129
Target:  5'- -uAGAAUUGCcGCCGggugagaggugcgagGGCUGCCGUc -3'
miRNA:   3'- cuUCUUGACGuCGGUa--------------CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 3980 0.66 0.818269
Target:  5'- aGAGGGCaccaaGUGGCCAUGGUCGaggCGCUg -3'
miRNA:   3'- cUUCUUGa----CGUCGGUACCGGCg--GCGA- -5'
28897 5' -57.8 NC_006146.1 + 21052 0.66 0.818269
Target:  5'- cGAGAcGCUGCgcuucgccgaGGCCcUGGCCGCC-Ca -3'
miRNA:   3'- cUUCU-UGACG----------UCGGuACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 24214 0.66 0.818269
Target:  5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3'
miRNA:   3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 62831 0.66 0.80958
Target:  5'- -uGGAACccugGCcGCCGUGGCCagGCCGg- -3'
miRNA:   3'- cuUCUUGa---CGuCGGUACCGG--CGGCga -5'
28897 5' -57.8 NC_006146.1 + 149199 0.66 0.80958
Target:  5'- aGAGGcACUGCAGgaUguUGGCCGCCcccuGCa -3'
miRNA:   3'- -CUUCuUGACGUC--GguACCGGCGG----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.