miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 156847 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 156826 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 155102 0.67 0.930073
Target:  5'- aUCAGGGAGGucAGgaACAccuucuGGUGG-GGCa -3'
miRNA:   3'- gGGUCCCUCC--UCgaUGU------UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 153769 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 153748 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 150724 0.67 0.93997
Target:  5'- -aCAGGGuggacGGGGCUggacucgggGCGAGUGGacgGGCc -3'
miRNA:   3'- ggGUCCCu----CCUCGA---------UGUUCAUCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 150671 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 149799 0.7 0.850971
Target:  5'- cUCCAGGGAgaugGGGGCcacaaACAGGcuccgGGUGGUg -3'
miRNA:   3'- -GGGUCCCU----CCUCGa----UGUUCa----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 148520 0.71 0.799273
Target:  5'- gCCAGGGuGGAgagcaugcuGCUggccacugccaugAUggGUGGUGGCc -3'
miRNA:   3'- gGGUCCCuCCU---------CGA-------------UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 147614 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 147593 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 147088 0.7 0.826369
Target:  5'- gCCAGGGAGaGAGaaguggGCGAGcUGG-GGCu -3'
miRNA:   3'- gGGUCCCUC-CUCga----UGUUC-AUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 145013 0.69 0.865637
Target:  5'- -gCAGGGAGGAGCUcuccaccACAAuGUucccgGGCa -3'
miRNA:   3'- ggGUCCCUCCUCGA-------UGUU-CAuca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 144536 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 144515 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 141458 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 141437 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 140126 0.67 0.930073
Target:  5'- --gAGGGGGuGGCgg-AGGUGGUGGCg -3'
miRNA:   3'- gggUCCCUCcUCGaugUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 139457 0.66 0.953037
Target:  5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3'
miRNA:   3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.