miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 117168 0.66 0.598346
Target:  5'- uCGCCCCGgcgcagCCGCGGCUcccggagagGAcGGGGaacguGCCc -3'
miRNA:   3'- cGUGGGGCa-----GGUGCCGG---------CU-CCCC-----CGG- -5'
28916 3' -64.9 NC_006146.1 + 128060 0.66 0.598346
Target:  5'- uCACCCCccgcaagaCCAcCGGCCucaugcaggugcGGGaGGGGCCg -3'
miRNA:   3'- cGUGGGGca------GGU-GCCGG------------CUC-CCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 128480 0.66 0.598346
Target:  5'- cGCACCCagcugCGUCUcgccuucgaggACGGCguCGGGGuGGCCc -3'
miRNA:   3'- -CGUGGG-----GCAGG-----------UGCCG--GCUCCcCCGG- -5'
28916 3' -64.9 NC_006146.1 + 45226 0.66 0.597403
Target:  5'- aGCACgCCGcCCagcugaaGCGGCUGAGuGGGaGUg -3'
miRNA:   3'- -CGUGgGGCaGG-------UGCCGGCUC-CCC-CGg -5'
28916 3' -64.9 NC_006146.1 + 61724 0.66 0.592697
Target:  5'- uGC-CCCCGgCCAcagacCGGCUGAGGaacgagcaucugauuGGGCa -3'
miRNA:   3'- -CGuGGGGCaGGU-----GCCGGCUCC---------------CCCGg -5'
28916 3' -64.9 NC_006146.1 + 170188 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 63236 0.66 0.588935
Target:  5'- -gACCCUGUUUcuguauggggcaAUGGCCuccGGGGGGCUc -3'
miRNA:   3'- cgUGGGGCAGG------------UGCCGGc--UCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 168325 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 169257 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 167393 0.66 0.588935
Target:  5'- --nUCCCGagggcggggCCGgGGCCuGGcGGGGGCCa -3'
miRNA:   3'- cguGGGGCa--------GGUgCCGG-CU-CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 166915 0.66 0.588935
Target:  5'- aGCGCCUCGaCCAUGGCC-AGcuuGGuGCCc -3'
miRNA:   3'- -CGUGGGGCaGGUGCCGGcUCc--CC-CGG- -5'
28916 3' -64.9 NC_006146.1 + 103125 0.66 0.588935
Target:  5'- cCGCCgucaCGUCCcUGGCCGAgcuGGGGGa- -3'
miRNA:   3'- cGUGGg---GCAGGuGCCGGCU---CCCCCgg -5'
28916 3' -64.9 NC_006146.1 + 49244 0.66 0.586117
Target:  5'- uGCACCUCcggGUCCAgGGCCgguagcccccuguaGAGGuGGUCu -3'
miRNA:   3'- -CGUGGGG---CAGGUgCCGG--------------CUCCcCCGG- -5'
28916 3' -64.9 NC_006146.1 + 154650 0.66 0.579552
Target:  5'- gGCGCgCUG-CCGcCGGCUGcaccgugguggcGGGGGGCg -3'
miRNA:   3'- -CGUGgGGCaGGU-GCCGGC------------UCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 38936 0.66 0.579552
Target:  5'- -gGCUCUugaaGCGGUCGAGGGuGGCCu -3'
miRNA:   3'- cgUGGGGcaggUGCCGGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 56976 0.66 0.579552
Target:  5'- -gACCCUGacggCCACcuGCUGguuaagauagaAGGGGGCCa -3'
miRNA:   3'- cgUGGGGCa---GGUGc-CGGC-----------UCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 127675 0.66 0.578615
Target:  5'- gGCACCCCaaagGUCCGCuGCaCGuacuccucguagcAGGacuGGGCCg -3'
miRNA:   3'- -CGUGGGG----CAGGUGcCG-GC-------------UCC---CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 24089 0.66 0.578615
Target:  5'- cGCgGCCUCG-CCugGGacgcgggUCGAGGGcGGCUg -3'
miRNA:   3'- -CG-UGGGGCaGGugCC-------GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 127702 0.66 0.578615
Target:  5'- aGCGCCCCaUCCcCGccucccgcgaggaGCUGAuGGGGCUg -3'
miRNA:   3'- -CGUGGGGcAGGuGC-------------CGGCUcCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 148582 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.