miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 3' -64.9 NC_006146.1 + 166967 0.68 0.469928
Target:  5'- uGUACCCCuGUucucccaauguaaUCACGGuacCCGAgaccuuGGGGGCCu -3'
miRNA:   3'- -CGUGGGG-CA-------------GGUGCC---GGCU------CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 166915 0.66 0.588935
Target:  5'- aGCGCCUCGaCCAUGGCC-AGcuuGGuGCCc -3'
miRNA:   3'- -CGUGGGGCaGGUGCCGGcUCc--CC-CGG- -5'
28916 3' -64.9 NC_006146.1 + 165793 0.66 0.570201
Target:  5'- -aGCCaCGguggCACGGCCGgcuaGGGGGGCg -3'
miRNA:   3'- cgUGGgGCag--GUGCCGGC----UCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 162561 0.7 0.351967
Target:  5'- aGCACCCCagggaguacuugcgCCACGGagGGucGGGGGCCc -3'
miRNA:   3'- -CGUGGGGca------------GGUGCCggCU--CCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 162191 0.66 0.551615
Target:  5'- cGguCCCCGUaggcugacCCAaguaaGGCgugucacaGAGGGGGCUa -3'
miRNA:   3'- -CguGGGGCA--------GGUg----CCGg-------CUCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 161741 0.69 0.419569
Target:  5'- uGUAgCCCGggggUgGCGGCugaggucCGAGGGGGCg -3'
miRNA:   3'- -CGUgGGGCa---GgUGCCG-------GCUCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 161209 0.7 0.351245
Target:  5'- gGCACCCCGUgccCCACuucaaaGCUGAcauaugugGGGGGCa -3'
miRNA:   3'- -CGUGGGGCA---GGUGc-----CGGCU--------CCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 159769 0.69 0.404315
Target:  5'- cCACCaCCGcCCccagguaGGCCGAGGGGucgaGCCc -3'
miRNA:   3'- cGUGG-GGCaGGug-----CCGGCUCCCC----CGG- -5'
28916 3' -64.9 NC_006146.1 + 159420 0.66 0.555318
Target:  5'- -gGCCCCcgaGUCCggguggcugAUGGUCGAGGcggggaacuccuugaGGGCCg -3'
miRNA:   3'- cgUGGGG---CAGG---------UGCCGGCUCC---------------CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 157956 0.68 0.470794
Target:  5'- aGCuACCCCaaggCCAcCGGgCGGGGccaGGGCCu -3'
miRNA:   3'- -CG-UGGGGca--GGU-GCCgGCUCC---CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 157815 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 157714 0.66 0.560887
Target:  5'- gGCGCCCgGagCGaGGCCGGGcaGGCCg -3'
miRNA:   3'- -CGUGGGgCagGUgCCGGCUCccCCGG- -5'
28916 3' -64.9 NC_006146.1 + 157331 0.72 0.28252
Target:  5'- gGC-CCCUGUCCGCgagggagagucucuGGCCGGGcGGGCg -3'
miRNA:   3'- -CGuGGGGCAGGUG--------------CCGGCUCcCCCGg -5'
28916 3' -64.9 NC_006146.1 + 156906 0.66 0.570201
Target:  5'- aGCACCag--CC-CGGCCGAGGccuGGGUg -3'
miRNA:   3'- -CGUGGggcaGGuGCCGGCUCC---CCCGg -5'
28916 3' -64.9 NC_006146.1 + 156710 0.73 0.227955
Target:  5'- cGCcuCCCCGUCCA-GGCUccGGGGGUCc -3'
miRNA:   3'- -CGu-GGGGCAGGUgCCGGcuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 155775 0.68 0.445188
Target:  5'- -gACCCCGccgcagaagagCCGCucgguGGCCcuGGGGGCCa -3'
miRNA:   3'- cgUGGGGCa----------GGUG-----CCGGcuCCCCCGG- -5'
28916 3' -64.9 NC_006146.1 + 154878 0.68 0.470794
Target:  5'- aGCuACCCCaaggCCAcCGGgCGGGGccaGGGCCu -3'
miRNA:   3'- -CG-UGGGGca--GGU-GCCgGCUCC---CCCGG- -5'
28916 3' -64.9 NC_006146.1 + 154737 0.66 0.570201
Target:  5'- gGCgACCCUGgggucugUCugGGggaCUGAGGGcGGCCg -3'
miRNA:   3'- -CG-UGGGGCa------GGugCC---GGCUCCC-CCGG- -5'
28916 3' -64.9 NC_006146.1 + 154650 0.66 0.579552
Target:  5'- gGCGCgCUG-CCGcCGGCUGcaccgugguggcGGGGGGCg -3'
miRNA:   3'- -CGUGgGGCaGGU-GCCGGC------------UCCCCCGg -5'
28916 3' -64.9 NC_006146.1 + 154637 0.66 0.560887
Target:  5'- gGCGCCCgGagCGaGGCCGGGcaGGCCg -3'
miRNA:   3'- -CGUGGGgCagGUgCCGGCUCccCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.