miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 170149 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 169218 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 168286 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 167354 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 165914 0.66 0.976161
Target:  5'- aGCUGaggACUgUGCUGGCAGuCUGAGuuAGg -3'
miRNA:   3'- -CGAUg--UGG-AUGACCGUC-GACUUggUC- -5'
28918 3' -52.7 NC_006146.1 + 161522 0.7 0.879011
Target:  5'- cCUGCACCUccacaaaccCUGGCAGCUGccuguGACCu- -3'
miRNA:   3'- cGAUGUGGAu--------GACCGUCGAC-----UUGGuc -5'
28918 3' -52.7 NC_006146.1 + 160065 0.67 0.967613
Target:  5'- ----gGCCUGCUGGCuGGCUucgGAGCCu- -3'
miRNA:   3'- cgaugUGGAUGACCG-UCGA---CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 159928 0.68 0.939263
Target:  5'- aGCgcCGCCUGCuuuaggugcacugUGGCAgGCUGGGCUAa -3'
miRNA:   3'- -CGauGUGGAUG-------------ACCGU-CGACUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 155465 0.72 0.786318
Target:  5'- uGCUGCGCCaggcaggACU-GCAGCcGGGCCAGc -3'
miRNA:   3'- -CGAUGUGGa------UGAcCGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 154664 0.66 0.980857
Target:  5'- gGCUGCACCgUGgUGGCGgggggcGCUGcuGCUGGg -3'
miRNA:   3'- -CGAUGUGG-AUgACCGU------CGACu-UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 151392 0.7 0.8938
Target:  5'- cGCUGCugCagGCgggggauggcgcggcGGCAGCUGuACCAGc -3'
miRNA:   3'- -CGAUGugGa-UGa--------------CCGUCGACuUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 137579 0.66 0.97352
Target:  5'- cGCUGC-CCggucCUGG-AGCUcGGGCCGGg -3'
miRNA:   3'- -CGAUGuGGau--GACCgUCGA-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 128601 0.66 0.970673
Target:  5'- gGCUGUACUUuCUGGC-GCUGGGCUAc -3'
miRNA:   3'- -CGAUGUGGAuGACCGuCGACUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 128328 0.66 0.982927
Target:  5'- gGCUGguCCUGCUGGCccuGgaGAugaaGCCGa -3'
miRNA:   3'- -CGAUguGGAUGACCGu--CgaCU----UGGUc -5'
28918 3' -52.7 NC_006146.1 + 127690 0.67 0.960829
Target:  5'- cGCUGCACgUACUccucGUAGCaGGACUGGg -3'
miRNA:   3'- -CGAUGUGgAUGAc---CGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 127564 0.78 0.460833
Target:  5'- gGCUGCGCCUGCUGGCccugggcGGCcGAggccgcgccgGCCGGg -3'
miRNA:   3'- -CGAUGUGGAUGACCG-------UCGaCU----------UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 127039 0.68 0.928519
Target:  5'- cGCUGCGcgugucaccagaggcCCUcgaGCUGGCGGCgcgggaagccgaaaGGGCCAGg -3'
miRNA:   3'- -CGAUGU---------------GGA---UGACCGUCGa-------------CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 118244 0.68 0.948907
Target:  5'- gGCUGCGCacgUACUGGgGGCcaGAGCCc- -3'
miRNA:   3'- -CGAUGUGg--AUGACCgUCGa-CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 117023 0.72 0.786318
Target:  5'- gGCUACGCCcuaACgggGGC-GCUGAggGCCAGc -3'
miRNA:   3'- -CGAUGUGGa--UGa--CCGuCGACU--UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 115398 0.71 0.813838
Target:  5'- cGCU-CGCgUGCaggaGGCAGCUGGcgGCCGGg -3'
miRNA:   3'- -CGAuGUGgAUGa---CCGUCGACU--UGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.