miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 3' -62 NC_006146.1 + 112712 0.66 0.672075
Target:  5'- cGCaGCAgGGCGUcccUGaggccCGUGUaCAGGCAGGUg -3'
miRNA:   3'- -CG-CGU-CCGCG---AC-----GCGCA-GUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 169561 0.66 0.666195
Target:  5'- aGCgGgGGGCuuccccggggcccgaGC-GCGCGUCGGGUGGGg -3'
miRNA:   3'- -CG-CgUCCG---------------CGaCGCGCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 167696 0.66 0.666195
Target:  5'- aGCgGgGGGCuuccccggggcccgaGC-GCGCGUCGGGUGGGg -3'
miRNA:   3'- -CG-CgUCCG---------------CGaCGCGCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 15935 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 22090 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 25168 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 19012 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 28246 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 19969 0.66 0.66227
Target:  5'- cCGgGGGCGuCUGCGagGUCAGG-AGGc -3'
miRNA:   3'- cGCgUCCGC-GACGCg-CAGUCCgUCCa -5'
28919 3' -62 NC_006146.1 + 129914 0.66 0.66227
Target:  5'- uGCGCccugGGGCGCcgGCGCGgcacCAcGGCGGu- -3'
miRNA:   3'- -CGCG----UCCGCGa-CGCGCa---GU-CCGUCca -5'
28919 3' -62 NC_006146.1 + 99361 0.66 0.66227
Target:  5'- aGCGUcGGCGCccgggccGCGCGUUgAGGCccAGGa -3'
miRNA:   3'- -CGCGuCCGCGa------CGCGCAG-UCCG--UCCa -5'
28919 3' -62 NC_006146.1 + 156670 0.66 0.661289
Target:  5'- cGUGUGGGCgagguuuggggcgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- -CGCGUCCG-------------CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 61808 0.66 0.652444
Target:  5'- -aGUGGGCGCgccgGCaCGgcaCGGGCGGGg -3'
miRNA:   3'- cgCGUCCGCGa---CGcGCa--GUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 77913 0.66 0.652444
Target:  5'- gGCGCAGGgGC-GgGCGgccucgCAGGUgccGGGg -3'
miRNA:   3'- -CGCGUCCgCGaCgCGCa-----GUCCG---UCCa -5'
28919 3' -62 NC_006146.1 + 53471 0.66 0.642602
Target:  5'- gGCGCGGGUGCcuCGUcgGUCAGGgcCGGGg -3'
miRNA:   3'- -CGCGUCCGCGacGCG--CAGUCC--GUCCa -5'
28919 3' -62 NC_006146.1 + 132786 0.66 0.642602
Target:  5'- cGCuGCAGGCucgcaGCUGCucaGCagcugCAGGCGGGg -3'
miRNA:   3'- -CG-CGUCCG-----CGACG---CGca---GUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 170492 0.66 0.639647
Target:  5'- aGCGgGGG-GCUuccccggacccccaGCGCGcggCGGGCGGGg -3'
miRNA:   3'- -CGCgUCCgCGA--------------CGCGCa--GUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 14624 0.66 0.622902
Target:  5'- cUGCuGGCGCUGCGUGggGGaGCucauGGUg -3'
miRNA:   3'- cGCGuCCGCGACGCGCagUC-CGu---CCA- -5'
28919 3' -62 NC_006146.1 + 150528 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 153606 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.