miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 170415 0.66 0.959502
Target:  5'- gGGGGC-GgaGGggGGggucccGCGGGGCCcgGCg -3'
miRNA:   3'- -CCUCGaCgaCCuuUU------CGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 170285 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 170174 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 170070 0.66 0.966432
Target:  5'- cGGGGCcGCgcgugGGGAuGGCcggcgggaGGGGCCgGCg -3'
miRNA:   3'- -CCUCGaCGa----CCUUuUCG--------UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 169484 0.66 0.959502
Target:  5'- gGGGGC-GgaGGggGGggucccGCGGGGCCcgGCg -3'
miRNA:   3'- -CCUCGaCgaCCuuUU------CGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 169354 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 169243 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 169198 0.74 0.610887
Target:  5'- cGGAGaCaGCa-GAAAcAGCAGAGCCUGCa -3'
miRNA:   3'- -CCUC-GaCGacCUUU-UCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 169152 0.69 0.869224
Target:  5'- gGGAugGCcgGCgGGAGGGGcCGGcGCCUGCa -3'
miRNA:   3'- -CCU--CGa-CGaCCUUUUC-GUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 168552 0.66 0.959502
Target:  5'- gGGGGC-GgaGGggGGggucccGCGGGGCCcgGCg -3'
miRNA:   3'- -CCUCGaCgaCCuuUU------CGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 168519 0.67 0.933028
Target:  5'- aGAGCccuCUGGAAGcccGCGGAcGCCUGUc -3'
miRNA:   3'- cCUCGac-GACCUUUu--CGUCU-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 168422 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 168311 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 168220 0.69 0.869224
Target:  5'- gGGAugGCcgGCgGGAGGGGcCGGcGCCUGCa -3'
miRNA:   3'- -CCU--CGa-CGaCCUUUUC-GUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 167620 0.66 0.959502
Target:  5'- gGGGGC-GgaGGggGGggucccGCGGGGCCcgGCg -3'
miRNA:   3'- -CCUCGaCgaCCuuUU------CGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 167490 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 167379 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 167288 0.69 0.869224
Target:  5'- gGGAugGCcgGCgGGAGGGGcCGGcGCCUGCa -3'
miRNA:   3'- -CCU--CGa-CGaCCUUUUC-GUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 166659 0.69 0.883904
Target:  5'- aGAGCgaGCgggaaGGggGAGCGGuguGGCCUGg -3'
miRNA:   3'- cCUCGa-CGa----CCuuUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 166263 0.69 0.890896
Target:  5'- cGGGGUauaUGUucUGGGcccGCAGGGUCUGCa -3'
miRNA:   3'- -CCUCG---ACG--ACCUuuuCGUCUCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.