miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 5' -53.8 NC_006146.1 + 62617 0.66 0.956629
Target:  5'- uGGCAGacGCACGUAUACAgGCugGGCUUu- -3'
miRNA:   3'- -CCGUU--CGUGCGUGUGUaCG--UCGAGua -5'
28922 5' -53.8 NC_006146.1 + 59824 0.66 0.952607
Target:  5'- gGGCGucGUcuCGCACG-GUGCGGCUCAg -3'
miRNA:   3'- -CCGUu-CGu-GCGUGUgUACGUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 135785 0.66 0.952607
Target:  5'- gGGCGAGCaACGgGgGCuuaGUGGCUCAa -3'
miRNA:   3'- -CCGUUCG-UGCgUgUGua-CGUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 3096 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 2164 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 1232 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 50427 0.66 0.948341
Target:  5'- cGGCAGGCAgGC-CGCAagcuucGCGGC-CAg -3'
miRNA:   3'- -CCGUUCGUgCGuGUGUa-----CGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 23482 0.66 0.948341
Target:  5'- uGGcCAGGUACGgGCugGUG-GGCUCGc -3'
miRNA:   3'- -CC-GUUCGUGCgUGugUACgUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 100962 0.66 0.948341
Target:  5'- aGCAGGC-CaGCGCGgG-GCGGCUCAc -3'
miRNA:   3'- cCGUUCGuG-CGUGUgUaCGUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 103630 0.66 0.943829
Target:  5'- cGCAAGCugGCACGCGgaggaGgGGCcCGc -3'
miRNA:   3'- cCGUUCGugCGUGUGUa----CgUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 82349 0.66 0.943828
Target:  5'- gGGUuacgGAGCAC-CACGgAUGCAGC-CAUc -3'
miRNA:   3'- -CCG----UUCGUGcGUGUgUACGUCGaGUA- -5'
28922 5' -53.8 NC_006146.1 + 14048 0.66 0.939066
Target:  5'- gGGCAGGCGCaaGCGCcgGCuGGCUgCGg -3'
miRNA:   3'- -CCGUUCGUGcgUGUGuaCG-UCGA-GUa -5'
28922 5' -53.8 NC_006146.1 + 124540 0.66 0.939066
Target:  5'- aGCAGGCACaaaACGCAgaGCAGCuUCAUc -3'
miRNA:   3'- cCGUUCGUGcg-UGUGUa-CGUCG-AGUA- -5'
28922 5' -53.8 NC_006146.1 + 110065 0.67 0.928784
Target:  5'- aGGgAAGCA-GCGCGgGUgugcaGCAGCUCGUc -3'
miRNA:   3'- -CCgUUCGUgCGUGUgUA-----CGUCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 117998 0.67 0.928784
Target:  5'- cGGgGGGcCACGCAgAcCAUGCggGGCUCGg -3'
miRNA:   3'- -CCgUUC-GUGCGUgU-GUACG--UCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 158066 0.67 0.925502
Target:  5'- gGGCAcagcaucagcaccuuGGaCAUGCGCACcgGCAGC-CGc -3'
miRNA:   3'- -CCGU---------------UC-GUGCGUGUGuaCGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 10044 0.67 0.923263
Target:  5'- aGGUGAGCugGCcagacggaAC-CAUGCAGC-CAg -3'
miRNA:   3'- -CCGUUCGugCG--------UGuGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 20211 0.67 0.917488
Target:  5'- aGGCuGGGCAUGUACuGCGUGCAGgaUUCGg -3'
miRNA:   3'- -CCG-UUCGUGCGUG-UGUACGUC--GAGUa -5'
28922 5' -53.8 NC_006146.1 + 95243 0.67 0.915705
Target:  5'- aGCGAGaCACGCACGCAcgguccuuggccucUGCAaGCUa-- -3'
miRNA:   3'- cCGUUC-GUGCGUGUGU--------------ACGU-CGAgua -5'
28922 5' -53.8 NC_006146.1 + 21249 0.67 0.911459
Target:  5'- uGCAGGCGCGC-UGCcgGCGcguGCUCGa -3'
miRNA:   3'- cCGUUCGUGCGuGUGuaCGU---CGAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.