miRNA display CGI


Results 1 - 20 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 170167 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 169993 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 169236 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 169061 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 168304 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 168269 0.7 0.397247
Target:  5'- cCCCGCCGUGuGGACGaaGCCgugCUCCAGacUGUg -3'
miRNA:   3'- -GGGUGGCAC-CCUGC--CGG---GGGGUC--ACG- -5'
28925 3' -63.4 NC_006146.1 + 168129 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 167372 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 167197 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 167160 0.68 0.530002
Target:  5'- aCCCACCccGGGcugaagggccacGCGGCCCCCagagacccugucuGUGUg -3'
miRNA:   3'- -GGGUGGcaCCC------------UGCCGGGGGgu-----------CACG- -5'
28925 3' -63.4 NC_006146.1 + 167075 0.67 0.602304
Target:  5'- aCCCGCCGgcuccaaaaaagugaGGGGggcgUGGCcauCCCCCGcGUGCc -3'
miRNA:   3'- -GGGUGGCa--------------CCCU----GCCG---GGGGGU-CACG- -5'
28925 3' -63.4 NC_006146.1 + 161979 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161912 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161845 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161778 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161450 0.66 0.658587
Target:  5'- aCCCAaggcgCGUGGGGCGGgUaggCUGGUGCg -3'
miRNA:   3'- -GGGUg----GCACCCUGCCgGgg-GGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 157968 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 157273 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 157059 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 154890 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.