miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 6668 1.13 0.005462
Target:  5'- aGGCCCCACUGAUGGUGGUAACAAUGGc -3'
miRNA:   3'- -CCGGGGUGACUACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 44820 0.85 0.263136
Target:  5'- aGGCCCCGCUGcgGcUGGUGACGgagGUGGg -3'
miRNA:   3'- -CCGGGGUGACuaCcACCAUUGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 127377 0.81 0.425016
Target:  5'- -aCCCCACUGAUGGUGGccGGCAGccUGGc -3'
miRNA:   3'- ccGGGGUGACUACCACCa-UUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 97313 0.78 0.591632
Target:  5'- -uCCCCuuCUG-UGGUGGUGGCGGUGGu -3'
miRNA:   3'- ccGGGGu-GACuACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 95062 0.78 0.602002
Target:  5'- gGGCuCCCACUcGUGGUGGcAGCuGUGGu -3'
miRNA:   3'- -CCG-GGGUGAcUACCACCaUUGuUACC- -5'
28927 3' -51.4 NC_006146.1 + 28332 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 25254 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 19098 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 16020 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 22176 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 12943 0.77 0.654041
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGa -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 41352 0.76 0.674789
Target:  5'- uGGCCCagggcCUGgcGGUGGUGGCcGUGGc -3'
miRNA:   3'- -CCGGGgu---GACuaCCACCAUUGuUACC- -5'
28927 3' -51.4 NC_006146.1 + 68778 0.75 0.745773
Target:  5'- aGGCCCUgcaaaaaagGCUG--GGUGGaUGGCAGUGGg -3'
miRNA:   3'- -CCGGGG---------UGACuaCCACC-AUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 49572 0.74 0.802722
Target:  5'- aGGCCCagCGCUGAggccagGGUGGggcUGugGAUGGu -3'
miRNA:   3'- -CCGGG--GUGACUa-----CCACC---AUugUUACC- -5'
28927 3' -51.4 NC_006146.1 + 149118 0.73 0.845878
Target:  5'- cGGCauCCCGCUGGgcuuagaaUGGUGGgcgGGCGGUGa -3'
miRNA:   3'- -CCG--GGGUGACU--------ACCACCa--UUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 126598 0.72 0.864869
Target:  5'- cGGCCCCAgcccccacuaccgguUUGgcGGUGGU--CGGUGGg -3'
miRNA:   3'- -CCGGGGU---------------GACuaCCACCAuuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 100695 0.72 0.876841
Target:  5'- cGGCCCUcggcacccggcGCUGcgGG-GGUGGguGUGGg -3'
miRNA:   3'- -CCGGGG-----------UGACuaCCaCCAUUguUACC- -5'
28927 3' -51.4 NC_006146.1 + 33142 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 33266 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 33388 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccgccUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.