Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28927 | 3' | -51.4 | NC_006146.1 | + | 165170 | 0.71 | 0.912864 |
Target: 5'- -aCCCUgguuacuguuuuuauGgUGAUGGUGGUGAUGGUGGu -3' miRNA: 3'- ccGGGG---------------UgACUACCACCAUUGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 6154 | 0.71 | 0.916432 |
Target: 5'- -aCCCCauccaagcaACUGAcGGUGGaAACAGUGGu -3' miRNA: 3'- ccGGGG---------UGACUaCCACCaUUGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 14353 | 0.71 | 0.916432 |
Target: 5'- cGGCCCUGCUGGUGG-GGU--CGGgucccgGGa -3' miRNA: 3'- -CCGGGGUGACUACCaCCAuuGUUa-----CC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 162025 | 0.71 | 0.927685 |
Target: 5'- cGGCUCCAC-GGUGGa-GUGGCAcuGUGGg -3' miRNA: 3'- -CCGGGGUGaCUACCacCAUUGU--UACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 112135 | 0.7 | 0.937948 |
Target: 5'- uGGCCUCgguGCUGAcauUGGaGGUAGCGuUGGc -3' miRNA: 3'- -CCGGGG---UGACU---ACCaCCAUUGUuACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 157287 | 0.7 | 0.937948 |
Target: 5'- aGCCCCAg-GGUGGgGGUGGCAAa-- -3' miRNA: 3'- cCGGGGUgaCUACCaCCAUUGUUacc -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 161437 | 0.7 | 0.937948 |
Target: 5'- uGGCCCCGCggGAacccaaggcgcgUGGggcgGGUAggcuggugcgucACAAUGGu -3' miRNA: 3'- -CCGGGGUGa-CU------------ACCa---CCAU------------UGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 113647 | 0.7 | 0.947226 |
Target: 5'- cGCCCCcguugcGCUGAUGGUcgacgagaGGUGGCucgGGc -3' miRNA: 3'- cCGGGG------UGACUACCA--------CCAUUGuuaCC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 108619 | 0.7 | 0.951502 |
Target: 5'- gGGgUCCGCgGAggcGGUGGUGAaggaGAUGGa -3' miRNA: 3'- -CCgGGGUGaCUa--CCACCAUUg---UUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 71165 | 0.7 | 0.951502 |
Target: 5'- cGGCaCUgugGCUugGGUGGUGGUAGcCGGUGGg -3' miRNA: 3'- -CCGgGG---UGA--CUACCACCAUU-GUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 40443 | 0.7 | 0.951502 |
Target: 5'- cGGCCCCGuagGcgGGUGc-GGCAAUGGc -3' miRNA: 3'- -CCGGGGUga-CuaCCACcaUUGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 112228 | 0.7 | 0.953145 |
Target: 5'- cGGCCUgGgUGGuugcaguuguugauaUGGUGGUAGCAuuagagGUGGc -3' miRNA: 3'- -CCGGGgUgACU---------------ACCACCAUUGU------UACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 90585 | 0.69 | 0.959342 |
Target: 5'- aGGCCCCAgUcgccaaaccacGAccucUGGUGGccgaGGCAGUGGu -3' miRNA: 3'- -CCGGGGUgA-----------CU----ACCACCa---UUGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 66873 | 0.69 | 0.962915 |
Target: 5'- cGGCCCCGaaGGUGGUgcugcuggaGGUGcugucGCAgauGUGGa -3' miRNA: 3'- -CCGGGGUgaCUACCA---------CCAU-----UGU---UACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 77330 | 0.69 | 0.966263 |
Target: 5'- uGCCCagGCUGAUGGUGaagGACGA-GGc -3' miRNA: 3'- cCGGGg-UGACUACCACca-UUGUUaCC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 104438 | 0.69 | 0.969392 |
Target: 5'- uGCCCCACaUGGUGGgGGUGAa----- -3' miRNA: 3'- cCGGGGUG-ACUACCaCCAUUguuacc -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 50226 | 0.69 | 0.969392 |
Target: 5'- uGCaCCCGCgaGAUGGUGG---CGGUGGc -3' miRNA: 3'- cCG-GGGUGa-CUACCACCauuGUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 141106 | 0.69 | 0.969392 |
Target: 5'- uGGCCCUugUGGcuUGGU--UGugAAUGGa -3' miRNA: 3'- -CCGGGGugACU--ACCAccAUugUUACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 162207 | 0.68 | 0.974757 |
Target: 5'- cGCCCCACaGGUGGcucagauUGGU-GCGAuccUGGa -3' miRNA: 3'- cCGGGGUGaCUACC-------ACCAuUGUU---ACC- -5' |
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28927 | 3' | -51.4 | NC_006146.1 | + | 33766 | 0.68 | 0.975019 |
Target: 5'- uGGgUCCGCUGGUccgGGUGGgcguggucCGAUGGg -3' miRNA: 3'- -CCgGGGUGACUA---CCACCauu-----GUUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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