miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 41352 0.76 0.674789
Target:  5'- uGGCCCagggcCUGgcGGUGGUGGCcGUGGc -3'
miRNA:   3'- -CCGGGgu---GACuaCCACCAUUGuUACC- -5'
28927 3' -51.4 NC_006146.1 + 42821 0.66 0.994387
Target:  5'- cGGCCCCucccgcaccuGCaUGAggccGGUGGUcuuGCGggGGg -3'
miRNA:   3'- -CCGGGG----------UG-ACUa---CCACCAu--UGUuaCC- -5'
28927 3' -51.4 NC_006146.1 + 42872 0.68 0.979852
Target:  5'- aGGUUCCACUGGUGGga--GGCGAaGGg -3'
miRNA:   3'- -CCGGGGUGACUACCaccaUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 44820 0.85 0.263136
Target:  5'- aGGCCCCGCUGcgGcUGGUGACGgagGUGGg -3'
miRNA:   3'- -CCGGGGUGACuaCcACCAUUGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 44868 0.66 0.99144
Target:  5'- gGGuCCCCGCUGAgaagccccUGGgcucGCGAUGGu -3'
miRNA:   3'- -CC-GGGGUGACUacc-----ACCau--UGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 49572 0.74 0.802722
Target:  5'- aGGCCCagCGCUGAggccagGGUGGggcUGugGAUGGu -3'
miRNA:   3'- -CCGGG--GUGACUa-----CCACC---AUugUUACC- -5'
28927 3' -51.4 NC_006146.1 + 50226 0.69 0.969392
Target:  5'- uGCaCCCGCgaGAUGGUGG---CGGUGGc -3'
miRNA:   3'- cCG-GGGUGa-CUACCACCauuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 66873 0.69 0.962915
Target:  5'- cGGCCCCGaaGGUGGUgcugcuggaGGUGcugucGCAgauGUGGa -3'
miRNA:   3'- -CCGGGGUgaCUACCA---------CCAU-----UGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 68778 0.75 0.745773
Target:  5'- aGGCCCUgcaaaaaagGCUG--GGUGGaUGGCAGUGGg -3'
miRNA:   3'- -CCGGGG---------UGACuaCCACC-AUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 68851 0.66 0.992534
Target:  5'- aGGCCCUGCUGGcaagcaGGcUGGcGACAGccUGGc -3'
miRNA:   3'- -CCGGGGUGACUa-----CC-ACCaUUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 71165 0.7 0.951502
Target:  5'- cGGCaCUgugGCUugGGUGGUGGUAGcCGGUGGg -3'
miRNA:   3'- -CCGgGG---UGA--CUACCACCAUU-GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 71341 0.67 0.985747
Target:  5'- uGGCCuuuCCAcCUGcUGG-GGUGcCAGUGGg -3'
miRNA:   3'- -CCGG---GGU-GACuACCaCCAUuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 77330 0.69 0.966263
Target:  5'- uGCCCagGCUGAUGGUGaagGACGA-GGc -3'
miRNA:   3'- cCGGGg-UGACUACCACca-UUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 80307 0.67 0.985747
Target:  5'- cGGCCaCCAgaGGUcGUGGUuuGGCGAcUGGg -3'
miRNA:   3'- -CCGG-GGUgaCUAcCACCA--UUGUU-ACC- -5'
28927 3' -51.4 NC_006146.1 + 90483 0.67 0.988874
Target:  5'- uGGauCCCCACUa--GGUGGUuACAggGGa -3'
miRNA:   3'- -CC--GGGGUGAcuaCCACCAuUGUuaCC- -5'
28927 3' -51.4 NC_006146.1 + 90585 0.69 0.959342
Target:  5'- aGGCCCCAgUcgccaaaccacGAccucUGGUGGccgaGGCAGUGGu -3'
miRNA:   3'- -CCGGGGUgA-----------CU----ACCACCa---UUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 95062 0.78 0.602002
Target:  5'- gGGCuCCCACUcGUGGUGGcAGCuGUGGu -3'
miRNA:   3'- -CCG-GGGUGAcUACCACCaUUGuUACC- -5'
28927 3' -51.4 NC_006146.1 + 97313 0.78 0.591632
Target:  5'- -uCCCCuuCUG-UGGUGGUGGCGGUGGu -3'
miRNA:   3'- ccGGGGu-GACuACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 100246 0.68 0.980728
Target:  5'- -cUCCCGCUGgcGgggugugagcggcucUGGUGGggGCAAUGGg -3'
miRNA:   3'- ccGGGGUGAC--U---------------ACCACCauUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 100695 0.72 0.876841
Target:  5'- cGGCCCUcggcacccggcGCUGcgGG-GGUGGguGUGGg -3'
miRNA:   3'- -CCGGGG-----------UGACuaCCaCCAUUguUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.