miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 159419 0.68 0.981989
Target:  5'- cGGCCCCcgaguccgggugGCUGAUGGUcGaGGCGG-GGa -3'
miRNA:   3'- -CCGGGG------------UGACUACCAcCaUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 38388 0.68 0.979852
Target:  5'- aGUCUCugUGGUgcggaugcauggGGUGGUGGCAucUGGg -3'
miRNA:   3'- cCGGGGugACUA------------CCACCAUUGUu-ACC- -5'
28927 3' -51.4 NC_006146.1 + 90585 0.69 0.959342
Target:  5'- aGGCCCCAgUcgccaaaccacGAccucUGGUGGccgaGGCAGUGGu -3'
miRNA:   3'- -CCGGGGUgA-----------CU----ACCACCa---UUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 113647 0.7 0.947226
Target:  5'- cGCCCCcguugcGCUGAUGGUcgacgagaGGUGGCucgGGc -3'
miRNA:   3'- cCGGGG------UGACUACCA--------CCAUUGuuaCC- -5'
28927 3' -51.4 NC_006146.1 + 44868 0.66 0.99144
Target:  5'- gGGuCCCCGCUGAgaagccccUGGgcucGCGAUGGu -3'
miRNA:   3'- -CC-GGGGUGACUacc-----ACCau--UGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 33766 0.68 0.975019
Target:  5'- uGGgUCCGCUGGUccgGGUGGgcguggucCGAUGGg -3'
miRNA:   3'- -CCgGGGUGACUA---CCACCauu-----GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 157287 0.7 0.937948
Target:  5'- aGCCCCAg-GGUGGgGGUGGCAAa-- -3'
miRNA:   3'- cCGGGGUgaCUACCaCCAUUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 157525 0.67 0.988874
Target:  5'- uGGCCgCGCaGAccacGGUGGUcGCGGUGa -3'
miRNA:   3'- -CCGGgGUGaCUa---CCACCAuUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 112135 0.7 0.937948
Target:  5'- uGGCCUCgguGCUGAcauUGGaGGUAGCGuUGGc -3'
miRNA:   3'- -CCGGGG---UGACU---ACCaCCAUUGUuACC- -5'
28927 3' -51.4 NC_006146.1 + 71341 0.67 0.985747
Target:  5'- uGGCCuuuCCAcCUGcUGG-GGUGcCAGUGGg -3'
miRNA:   3'- -CCGG---GGU-GACuACCaCCAUuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 68851 0.66 0.992534
Target:  5'- aGGCCCUGCUGGcaagcaGGcUGGcGACAGccUGGc -3'
miRNA:   3'- -CCGGGGUGACUa-----CC-ACCaUUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 162207 0.68 0.974757
Target:  5'- cGCCCCACaGGUGGcucagauUGGU-GCGAuccUGGa -3'
miRNA:   3'- cCGGGGUGaCUACC-------ACCAuUGUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 104438 0.69 0.969392
Target:  5'- uGCCCCACaUGGUGGgGGUGAa----- -3'
miRNA:   3'- cCGGGGUG-ACUACCaCCAUUguuacc -5'
28927 3' -51.4 NC_006146.1 + 112228 0.7 0.953145
Target:  5'- cGGCCUgGgUGGuugcaguuguugauaUGGUGGUAGCAuuagagGUGGc -3'
miRNA:   3'- -CCGGGgUgACU---------------ACCACCAUUGU------UACC- -5'
28927 3' -51.4 NC_006146.1 + 71165 0.7 0.951502
Target:  5'- cGGCaCUgugGCUugGGUGGUGGUAGcCGGUGGg -3'
miRNA:   3'- -CCGgGG---UGA--CUACCACCAUU-GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 162025 0.71 0.927685
Target:  5'- cGGCUCCAC-GGUGGa-GUGGCAcuGUGGg -3'
miRNA:   3'- -CCGGGGUGaCUACCacCAUUGU--UACC- -5'
28927 3' -51.4 NC_006146.1 + 119942 0.66 0.995163
Target:  5'- cGGCgCUGCUGccGGaGGUcuCGGUGGg -3'
miRNA:   3'- -CCGgGGUGACuaCCaCCAuuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 139790 0.67 0.990223
Target:  5'- cGGCCCuCGguggugUUGAUGGgGGUGG-AGUGGg -3'
miRNA:   3'- -CCGGG-GU------GACUACCaCCAUUgUUACC- -5'
28927 3' -51.4 NC_006146.1 + 6668 1.13 0.005462
Target:  5'- aGGCCCCACUGAUGGUGGUAACAAUGGc -3'
miRNA:   3'- -CCGGGGUGACUACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 77330 0.69 0.966263
Target:  5'- uGCCCagGCUGAUGGUGaagGACGA-GGc -3'
miRNA:   3'- cCGGGg-UGACUACCACca-UUGUUaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.