miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 44820 0.85 0.263136
Target:  5'- aGGCCCCGCUGcgGcUGGUGACGgagGUGGg -3'
miRNA:   3'- -CCGGGGUGACuaCcACCAUUGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 113647 0.7 0.947226
Target:  5'- cGCCCCcguugcGCUGAUGGUcgacgagaGGUGGCucgGGc -3'
miRNA:   3'- cCGGGG------UGACUACCA--------CCAUUGuuaCC- -5'
28927 3' -51.4 NC_006146.1 + 112228 0.7 0.953145
Target:  5'- cGGCCUgGgUGGuugcaguuguugauaUGGUGGUAGCAuuagagGUGGc -3'
miRNA:   3'- -CCGGGgUgACU---------------ACCACCAUUGU------UACC- -5'
28927 3' -51.4 NC_006146.1 + 4207 0.66 0.995163
Target:  5'- cGGCUUCAUgacGGUGGUGGUcACGGc-- -3'
miRNA:   3'- -CCGGGGUGa--CUACCACCAuUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 22176 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 25254 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 12943 0.77 0.654041
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGa -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 41352 0.76 0.674789
Target:  5'- uGGCCCagggcCUGgcGGUGGUGGCcGUGGc -3'
miRNA:   3'- -CCGGGgu---GACuaCCACCAUUGuUACC- -5'
28927 3' -51.4 NC_006146.1 + 33266 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 157287 0.7 0.937948
Target:  5'- aGCCCCAg-GGUGGgGGUGGCAAa-- -3'
miRNA:   3'- cCGGGGUgaCUACCaCCAUUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 165170 0.71 0.912864
Target:  5'- -aCCCUgguuacuguuuuuauGgUGAUGGUGGUGAUGGUGGu -3'
miRNA:   3'- ccGGGG---------------UgACUACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 33142 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 127377 0.81 0.425016
Target:  5'- -aCCCCACUGAUGGUGGccGGCAGccUGGc -3'
miRNA:   3'- ccGGGGUGACUACCACCa-UUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 162025 0.71 0.927685
Target:  5'- cGGCUCCAC-GGUGGa-GUGGCAcuGUGGg -3'
miRNA:   3'- -CCGGGGUGaCUACCacCAUUGU--UACC- -5'
28927 3' -51.4 NC_006146.1 + 16020 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 149118 0.73 0.845878
Target:  5'- cGGCauCCCGCUGGgcuuagaaUGGUGGgcgGGCGGUGa -3'
miRNA:   3'- -CCG--GGGUGACU--------ACCACCa--UUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 112135 0.7 0.937948
Target:  5'- uGGCCUCgguGCUGAcauUGGaGGUAGCGuUGGc -3'
miRNA:   3'- -CCGGGG---UGACU---ACCaCCAUUGUuACC- -5'
28927 3' -51.4 NC_006146.1 + 71165 0.7 0.951502
Target:  5'- cGGCaCUgugGCUugGGUGGUGGUAGcCGGUGGg -3'
miRNA:   3'- -CCGgGG---UGA--CUACCACCAUU-GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 19098 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 28332 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.