miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 4207 0.66 0.995163
Target:  5'- cGGCUUCAUgacGGUGGUGGUcACGGc-- -3'
miRNA:   3'- -CCGGGGUGa--CUACCACCAuUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 6048 0.66 0.992534
Target:  5'- -aUCCaagcaACUGAcGGUGGUAACGGaGGa -3'
miRNA:   3'- ccGGGg----UGACUaCCACCAUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 6154 0.71 0.916432
Target:  5'- -aCCCCauccaagcaACUGAcGGUGGaAACAGUGGu -3'
miRNA:   3'- ccGGGG---------UGACUaCCACCaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 6668 1.13 0.005462
Target:  5'- aGGCCCCACUGAUGGUGGUAACAAUGGc -3'
miRNA:   3'- -CCGGGGUGACUACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 12943 0.77 0.654041
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGa -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 14353 0.71 0.916432
Target:  5'- cGGCCCUGCUGGUGG-GGU--CGGgucccgGGa -3'
miRNA:   3'- -CCGGGGUGACUACCaCCAuuGUUa-----CC- -5'
28927 3' -51.4 NC_006146.1 + 14620 0.66 0.994387
Target:  5'- uGCCCUGCUGGcgcUGcGUGGgggAGCucAUGGu -3'
miRNA:   3'- cCGGGGUGACU---AC-CACCa--UUGu-UACC- -5'
28927 3' -51.4 NC_006146.1 + 16020 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 19098 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 22176 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 22404 0.66 0.993513
Target:  5'- uGGCCCCGg-GGUccaccGUGGUGACccaGGUGGc -3'
miRNA:   3'- -CCGGGGUgaCUAc----CACCAUUG---UUACC- -5'
28927 3' -51.4 NC_006146.1 + 25254 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 28332 0.77 0.63322
Target:  5'- uGGCCCCGCccGGUGGccuuggGGUAGCucUGGg -3'
miRNA:   3'- -CCGGGGUGa-CUACCa-----CCAUUGuuACC- -5'
28927 3' -51.4 NC_006146.1 + 33142 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 33266 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccggcUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 33388 0.72 0.88403
Target:  5'- uGCCCCGCUccgGGUGGggGGUGGCccgccUGGg -3'
miRNA:   3'- cCGGGGUGA---CUACCa-CCAUUGuu---ACC- -5'
28927 3' -51.4 NC_006146.1 + 33766 0.68 0.975019
Target:  5'- uGGgUCCGCUGGUccgGGUGGgcguggucCGAUGGg -3'
miRNA:   3'- -CCgGGGUGACUA---CCACCauu-----GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 37640 0.66 0.99494
Target:  5'- aGGCCCCACUuauuUGGUguauugguguugagGGUAGgGGggcUGGg -3'
miRNA:   3'- -CCGGGGUGAcu--ACCA--------------CCAUUgUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 38388 0.68 0.979852
Target:  5'- aGUCUCugUGGUgcggaugcauggGGUGGUGGCAucUGGg -3'
miRNA:   3'- cCGGGGugACUA------------CCACCAUUGUu-ACC- -5'
28927 3' -51.4 NC_006146.1 + 40443 0.7 0.951502
Target:  5'- cGGCCCCGuagGcgGGUGc-GGCAAUGGc -3'
miRNA:   3'- -CCGGGGUga-CuaCCACcaUUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.