miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 165170 0.71 0.912864
Target:  5'- -aCCCUgguuacuguuuuuauGgUGAUGGUGGUGAUGGUGGu -3'
miRNA:   3'- ccGGGG---------------UgACUACCACCAUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 162207 0.68 0.974757
Target:  5'- cGCCCCACaGGUGGcucagauUGGU-GCGAuccUGGa -3'
miRNA:   3'- cCGGGGUGaCUACC-------ACCAuUGUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 162025 0.71 0.927685
Target:  5'- cGGCUCCAC-GGUGGa-GUGGCAcuGUGGg -3'
miRNA:   3'- -CCGGGGUGaCUACCacCAUUGU--UACC- -5'
28927 3' -51.4 NC_006146.1 + 161644 0.66 0.993513
Target:  5'- uGGCCUUaguuuGCUG-UGGgcUGGgGACAGUGGu -3'
miRNA:   3'- -CCGGGG-----UGACuACC--ACCaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 161437 0.7 0.937948
Target:  5'- uGGCCCCGCggGAacccaaggcgcgUGGggcgGGUAggcuggugcgucACAAUGGu -3'
miRNA:   3'- -CCGGGGUGa-CU------------ACCa---CCAU------------UGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 159419 0.68 0.981989
Target:  5'- cGGCCCCcgaguccgggugGCUGAUGGUcGaGGCGG-GGa -3'
miRNA:   3'- -CCGGGG------------UGACUACCAcCaUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 157525 0.67 0.988874
Target:  5'- uGGCCgCGCaGAccacGGUGGUcGCGGUGa -3'
miRNA:   3'- -CCGGgGUGaCUa---CCACCAuUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 157287 0.7 0.937948
Target:  5'- aGCCCCAg-GGUGGgGGUGGCAAa-- -3'
miRNA:   3'- cCGGGGUgaCUACCaCCAUUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 155212 0.67 0.983952
Target:  5'- uGGCCCCG-UGAUGaaGGUGuACAggcuGUGGg -3'
miRNA:   3'- -CCGGGGUgACUACcaCCAU-UGU----UACC- -5'
28927 3' -51.4 NC_006146.1 + 154249 0.67 0.988874
Target:  5'- aGCCaggCCGCUGGUGGgccucaGGUuGACGGUGa -3'
miRNA:   3'- cCGG---GGUGACUACCa-----CCA-UUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 149118 0.73 0.845878
Target:  5'- cGGCauCCCGCUGGgcuuagaaUGGUGGgcgGGCGGUGa -3'
miRNA:   3'- -CCG--GGGUGACU--------ACCACCa--UUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 141106 0.69 0.969392
Target:  5'- uGGCCCUugUGGcuUGGU--UGugAAUGGa -3'
miRNA:   3'- -CCGGGGugACU--ACCAccAUugUUACC- -5'
28927 3' -51.4 NC_006146.1 + 139790 0.67 0.990223
Target:  5'- cGGCCCuCGguggugUUGAUGGgGGUGG-AGUGGg -3'
miRNA:   3'- -CCGGG-GU------GACUACCaCCAUUgUUACC- -5'
28927 3' -51.4 NC_006146.1 + 139129 0.66 0.994387
Target:  5'- uGGCUCCGaUGGcgcaGGUGGggGCAGUGu -3'
miRNA:   3'- -CCGGGGUgACUa---CCACCauUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 127377 0.81 0.425016
Target:  5'- -aCCCCACUGAUGGUGGccGGCAGccUGGc -3'
miRNA:   3'- ccGGGGUGACUACCACCa-UUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 126598 0.72 0.864869
Target:  5'- cGGCCCCAgcccccacuaccgguUUGgcGGUGGU--CGGUGGg -3'
miRNA:   3'- -CCGGGGU---------------GACuaCCACCAuuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 120885 0.68 0.977288
Target:  5'- gGGCCCCuuCUGcuucGGUGGUGccccccuucgugcACAAUGu -3'
miRNA:   3'- -CCGGGGu-GACua--CCACCAU-------------UGUUACc -5'
28927 3' -51.4 NC_006146.1 + 119942 0.66 0.995163
Target:  5'- cGGCgCUGCUGccGGaGGUcuCGGUGGg -3'
miRNA:   3'- -CCGgGGUGACuaCCaCCAuuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 113647 0.7 0.947226
Target:  5'- cGCCCCcguugcGCUGAUGGUcgacgagaGGUGGCucgGGc -3'
miRNA:   3'- cCGGGG------UGACUACCA--------CCAUUGuuaCC- -5'
28927 3' -51.4 NC_006146.1 + 112228 0.7 0.953145
Target:  5'- cGGCCUgGgUGGuugcaguuguugauaUGGUGGUAGCAuuagagGUGGc -3'
miRNA:   3'- -CCGGGgUgACU---------------ACCACCAUUGU------UACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.