miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 100695 0.72 0.876841
Target:  5'- cGGCCCUcggcacccggcGCUGcgGG-GGUGGguGUGGg -3'
miRNA:   3'- -CCGGGG-----------UGACuaCCaCCAUUguUACC- -5'
28927 3' -51.4 NC_006146.1 + 50226 0.69 0.969392
Target:  5'- uGCaCCCGCgaGAUGGUGG---CGGUGGc -3'
miRNA:   3'- cCG-GGGUGa-CUACCACCauuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 77330 0.69 0.966263
Target:  5'- uGCCCagGCUGAUGGUGaagGACGA-GGc -3'
miRNA:   3'- cCGGGg-UGACUACCACca-UUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 66873 0.69 0.962915
Target:  5'- cGGCCCCGaaGGUGGUgcugcuggaGGUGcugucGCAgauGUGGa -3'
miRNA:   3'- -CCGGGGUgaCUACCA---------CCAU-----UGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 40443 0.7 0.951502
Target:  5'- cGGCCCCGuagGcgGGUGc-GGCAAUGGc -3'
miRNA:   3'- -CCGGGGUga-CuaCCACcaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 108619 0.7 0.951502
Target:  5'- gGGgUCCGCgGAggcGGUGGUGAaggaGAUGGa -3'
miRNA:   3'- -CCgGGGUGaCUa--CCACCAUUg---UUACC- -5'
28927 3' -51.4 NC_006146.1 + 161437 0.7 0.937948
Target:  5'- uGGCCCCGCggGAacccaaggcgcgUGGggcgGGUAggcuggugcgucACAAUGGu -3'
miRNA:   3'- -CCGGGGUGa-CU------------ACCa---CCAU------------UGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 14353 0.71 0.916432
Target:  5'- cGGCCCUGCUGGUGG-GGU--CGGgucccgGGa -3'
miRNA:   3'- -CCGGGGUGACUACCaCCAuuGUUa-----CC- -5'
28927 3' -51.4 NC_006146.1 + 6154 0.71 0.916432
Target:  5'- -aCCCCauccaagcaACUGAcGGUGGaAACAGUGGu -3'
miRNA:   3'- ccGGGG---------UGACUaCCACCaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 141106 0.69 0.969392
Target:  5'- uGGCCCUugUGGcuUGGU--UGugAAUGGa -3'
miRNA:   3'- -CCGGGGugACU--ACCAccAUugUUACC- -5'
28927 3' -51.4 NC_006146.1 + 120885 0.68 0.977288
Target:  5'- gGGCCCCuuCUGcuucGGUGGUGccccccuucgugcACAAUGu -3'
miRNA:   3'- -CCGGGGu-GACua--CCACCAU-------------UGUUACc -5'
28927 3' -51.4 NC_006146.1 + 42872 0.68 0.979852
Target:  5'- aGGUUCCACUGGUGGga--GGCGAaGGg -3'
miRNA:   3'- -CCGGGGUGACUACCaccaUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 37640 0.66 0.99494
Target:  5'- aGGCCCCACUuauuUGGUguauugguguugagGGUAGgGGggcUGGg -3'
miRNA:   3'- -CCGGGGUGAcu--ACCA--------------CCAUUgUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 139129 0.66 0.994387
Target:  5'- uGGCUCCGaUGGcgcaGGUGGggGCAGUGu -3'
miRNA:   3'- -CCGGGGUgACUa---CCACCauUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 14620 0.66 0.994387
Target:  5'- uGCCCUGCUGGcgcUGcGUGGgggAGCucAUGGu -3'
miRNA:   3'- cCGGGGUGACU---AC-CACCa--UUGu-UACC- -5'
28927 3' -51.4 NC_006146.1 + 22404 0.66 0.993513
Target:  5'- uGGCCCCGg-GGUccaccGUGGUGACccaGGUGGc -3'
miRNA:   3'- -CCGGGGUgaCUAc----CACCAUUG---UUACC- -5'
28927 3' -51.4 NC_006146.1 + 6048 0.66 0.992534
Target:  5'- -aUCCaagcaACUGAcGGUGGUAACGGaGGa -3'
miRNA:   3'- ccGGGg----UGACUaCCACCAUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 139790 0.67 0.990223
Target:  5'- cGGCCCuCGguggugUUGAUGGgGGUGG-AGUGGg -3'
miRNA:   3'- -CCGGG-GU------GACUACCaCCAUUgUUACC- -5'
28927 3' -51.4 NC_006146.1 + 80307 0.67 0.985747
Target:  5'- cGGCCaCCAgaGGUcGUGGUuuGGCGAcUGGg -3'
miRNA:   3'- -CCGG-GGUgaCUAcCACCA--UUGUU-ACC- -5'
28927 3' -51.4 NC_006146.1 + 100246 0.68 0.980728
Target:  5'- -cUCCCGCUGgcGgggugugagcggcucUGGUGGggGCAAUGGg -3'
miRNA:   3'- ccGGGGUGAC--U---------------ACCACCauUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.