miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 100246 0.68 0.980728
Target:  5'- -cUCCCGCUGgcGgggugugagcggcucUGGUGGggGCAAUGGg -3'
miRNA:   3'- ccGGGGUGAC--U---------------ACCACCauUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 42872 0.68 0.979852
Target:  5'- aGGUUCCACUGGUGGga--GGCGAaGGg -3'
miRNA:   3'- -CCGGGGUGACUACCaccaUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 38388 0.68 0.979852
Target:  5'- aGUCUCugUGGUgcggaugcauggGGUGGUGGCAucUGGg -3'
miRNA:   3'- cCGGGGugACUA------------CCACCAUUGUu-ACC- -5'
28927 3' -51.4 NC_006146.1 + 120885 0.68 0.977288
Target:  5'- gGGCCCCuuCUGcuucGGUGGUGccccccuucgugcACAAUGu -3'
miRNA:   3'- -CCGGGGu-GACua--CCACCAU-------------UGUUACc -5'
28927 3' -51.4 NC_006146.1 + 33766 0.68 0.975019
Target:  5'- uGGgUCCGCUGGUccgGGUGGgcguggucCGAUGGg -3'
miRNA:   3'- -CCgGGGUGACUA---CCACCauu-----GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 162207 0.68 0.974757
Target:  5'- cGCCCCACaGGUGGcucagauUGGU-GCGAuccUGGa -3'
miRNA:   3'- cCGGGGUGaCUACC-------ACCAuUGUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 141106 0.69 0.969392
Target:  5'- uGGCCCUugUGGcuUGGU--UGugAAUGGa -3'
miRNA:   3'- -CCGGGGugACU--ACCAccAUugUUACC- -5'
28927 3' -51.4 NC_006146.1 + 104438 0.69 0.969392
Target:  5'- uGCCCCACaUGGUGGgGGUGAa----- -3'
miRNA:   3'- cCGGGGUG-ACUACCaCCAUUguuacc -5'
28927 3' -51.4 NC_006146.1 + 50226 0.69 0.969392
Target:  5'- uGCaCCCGCgaGAUGGUGG---CGGUGGc -3'
miRNA:   3'- cCG-GGGUGa-CUACCACCauuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 77330 0.69 0.966263
Target:  5'- uGCCCagGCUGAUGGUGaagGACGA-GGc -3'
miRNA:   3'- cCGGGg-UGACUACCACca-UUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 66873 0.69 0.962915
Target:  5'- cGGCCCCGaaGGUGGUgcugcuggaGGUGcugucGCAgauGUGGa -3'
miRNA:   3'- -CCGGGGUgaCUACCA---------CCAU-----UGU---UACC- -5'
28927 3' -51.4 NC_006146.1 + 90585 0.69 0.959342
Target:  5'- aGGCCCCAgUcgccaaaccacGAccucUGGUGGccgaGGCAGUGGu -3'
miRNA:   3'- -CCGGGGUgA-----------CU----ACCACCa---UUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 112228 0.7 0.953145
Target:  5'- cGGCCUgGgUGGuugcaguuguugauaUGGUGGUAGCAuuagagGUGGc -3'
miRNA:   3'- -CCGGGgUgACU---------------ACCACCAUUGU------UACC- -5'
28927 3' -51.4 NC_006146.1 + 40443 0.7 0.951502
Target:  5'- cGGCCCCGuagGcgGGUGc-GGCAAUGGc -3'
miRNA:   3'- -CCGGGGUga-CuaCCACcaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 108619 0.7 0.951502
Target:  5'- gGGgUCCGCgGAggcGGUGGUGAaggaGAUGGa -3'
miRNA:   3'- -CCgGGGUGaCUa--CCACCAUUg---UUACC- -5'
28927 3' -51.4 NC_006146.1 + 71165 0.7 0.951502
Target:  5'- cGGCaCUgugGCUugGGUGGUGGUAGcCGGUGGg -3'
miRNA:   3'- -CCGgGG---UGA--CUACCACCAUU-GUUACC- -5'
28927 3' -51.4 NC_006146.1 + 113647 0.7 0.947226
Target:  5'- cGCCCCcguugcGCUGAUGGUcgacgagaGGUGGCucgGGc -3'
miRNA:   3'- cCGGGG------UGACUACCA--------CCAUUGuuaCC- -5'
28927 3' -51.4 NC_006146.1 + 157287 0.7 0.937948
Target:  5'- aGCCCCAg-GGUGGgGGUGGCAAa-- -3'
miRNA:   3'- cCGGGGUgaCUACCaCCAUUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 112135 0.7 0.937948
Target:  5'- uGGCCUCgguGCUGAcauUGGaGGUAGCGuUGGc -3'
miRNA:   3'- -CCGGGG---UGACU---ACCaCCAUUGUuACC- -5'
28927 3' -51.4 NC_006146.1 + 161437 0.7 0.937948
Target:  5'- uGGCCCCGCggGAacccaaggcgcgUGGggcgGGUAggcuggugcgucACAAUGGu -3'
miRNA:   3'- -CCGGGGUGa-CU------------ACCa---CCAU------------UGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.