miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 33221 0.66 0.522441
Target:  5'- uGCuccGGGGCagccGGGuGGCCGCcGGCGggUCCg -3'
miRNA:   3'- cCGu--CCCCG----CCC-CCGGUGuCCGU--GGG- -5'
28930 3' -66 NC_006146.1 + 151466 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 148388 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 145310 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 142232 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 41758 0.66 0.495397
Target:  5'- cGGguGGGcuucccGCcGGaGGCCcugcgccCGGGCGCCCg -3'
miRNA:   3'- -CCguCCC------CGcCC-CCGGu------GUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 101667 0.66 0.486523
Target:  5'- uGGCccuGGGGgGaaacGGGCUACGGGCGgCg -3'
miRNA:   3'- -CCGu--CCCCgCc---CCCGGUGUCCGUgGg -5'
28930 3' -66 NC_006146.1 + 100273 0.66 0.486523
Target:  5'- uGGUGGGGGCaauGGGGCgG-AGGCAgCa -3'
miRNA:   3'- -CCGUCCCCGc--CCCCGgUgUCCGUgGg -5'
28930 3' -66 NC_006146.1 + 77838 0.66 0.486523
Target:  5'- aGGgGGGGGCGGGGG--GguGGgACUUu -3'
miRNA:   3'- -CCgUCCCCGCCCCCggUguCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 154544 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 157622 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 18867 0.66 0.504344
Target:  5'- gGGUGGuGGacguGCGGGGGCCuCA-GCcCCCa -3'
miRNA:   3'- -CCGUC-CC----CGCCCCCGGuGUcCGuGGG- -5'
28930 3' -66 NC_006146.1 + 64176 0.66 0.522441
Target:  5'- aGGCu-GGGUGGGGGCaGCAGGagUugCa -3'
miRNA:   3'- -CCGucCCCGCCCCCGgUGUCC--GugGg -5'
28930 3' -66 NC_006146.1 + 118633 0.66 0.52153
Target:  5'- cGUGGGGGCGcccGGGGCC-CAGuacacguGCGUCCa -3'
miRNA:   3'- cCGUCCCCGC---CCCCGGuGUC-------CGUGGG- -5'
28930 3' -66 NC_006146.1 + 40550 0.66 0.52153
Target:  5'- aGCAGGGucaugaaggugguGCGGGGGaCGCugaugAGGUccugGCCCu -3'
miRNA:   3'- cCGUCCC-------------CGCCCCCgGUG-----UCCG----UGGG- -5'
28930 3' -66 NC_006146.1 + 53593 0.66 0.51336
Target:  5'- uGGCAGGGaugcCGGGgaaaGGgCGC-GGCACCg -3'
miRNA:   3'- -CCGUCCCc---GCCC----CCgGUGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 167149 0.66 0.51336
Target:  5'- aGGUcuAGGGGacccacccCGGgcugaaGGGCCACGcGGCcCCCa -3'
miRNA:   3'- -CCG--UCCCC--------GCC------CCCGGUGU-CCGuGGG- -5'
28930 3' -66 NC_006146.1 + 113509 0.66 0.512455
Target:  5'- cGGCcGGGcacggucGCGGGGccagcCCACcGGCGCCa -3'
miRNA:   3'- -CCGuCCC-------CGCCCCc----GGUGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 128483 0.66 0.504344
Target:  5'- uGUAGGccaGGGGGCCcacgGCGGGCACg- -3'
miRNA:   3'- cCGUCCccgCCCCCGG----UGUCCGUGgg -5'
28930 3' -66 NC_006146.1 + 29587 0.66 0.504344
Target:  5'- gGGaCAGGacccCGGGGGCuCAgcCAGGCugaACCCg -3'
miRNA:   3'- -CC-GUCCcc--GCCCCCG-GU--GUCCG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.