miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 4865 1.11 0.000337
Target:  5'- gGGCAGGGGCGGGGGCCACAGGCACCCc -3'
miRNA:   3'- -CCGUCCCCGCCCCCGGUGUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 77915 0.86 0.020738
Target:  5'- cGCAGGGGCGGGcGGCCucGCAGGUGCCg -3'
miRNA:   3'- cCGUCCCCGCCC-CCGG--UGUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 168332 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 170195 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 169264 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 167400 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 170294 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 167499 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 168431 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 169363 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 34011 0.8 0.064777
Target:  5'- aGGCAGGGG-GGGGGUCgggGCAGGCGggcgugguCCCg -3'
miRNA:   3'- -CCGUCCCCgCCCCCGG---UGUCCGU--------GGG- -5'
28930 3' -66 NC_006146.1 + 55042 0.79 0.069808
Target:  5'- gGGUcGGGGcCGGGGccuGCCACAGGCGgCCg -3'
miRNA:   3'- -CCGuCCCC-GCCCC---CGGUGUCCGUgGG- -5'
28930 3' -66 NC_006146.1 + 92163 0.78 0.079037
Target:  5'- gGGCugcugcugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- -CCG--------UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 92103 0.78 0.079037
Target:  5'- gGGCugcugcugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- -CCG--------UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 92253 0.78 0.079037
Target:  5'- uGGCugcugcugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- -CCG--------UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 92014 0.78 0.079037
Target:  5'- gGGCugcugcugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- -CCG--------UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 3790 0.78 0.08725
Target:  5'- gGGgGGGGGgGGGGGCaCGCGGGggauggccaCGCCCc -3'
miRNA:   3'- -CCgUCCCCgCCCCCG-GUGUCC---------GUGGG- -5'
28930 3' -66 NC_006146.1 + 92200 0.78 0.091655
Target:  5'- uGCugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- cCG--UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 92290 0.78 0.091655
Target:  5'- uGCugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- cCG--UCCCCGCCC---CCGGugUCCGugGG- -5'
28930 3' -66 NC_006146.1 + 92051 0.78 0.091655
Target:  5'- uGCugGGGGGCGGGcccGGCCugGGGCugCUg -3'
miRNA:   3'- cCG--UCCCCGCCC---CCGGugUCCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.