miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 297 0.66 0.469006
Target:  5'- -cCGGGGGCGGGcccGGCgCGCucGCcacGCCCa -3'
miRNA:   3'- ccGUCCCCGCCC---CCG-GUGucCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 579 0.69 0.328148
Target:  5'- aGGagAGGGGcCGGGGG-CGCGgcccGGCGCCa -3'
miRNA:   3'- -CCg-UCCCC-GCCCCCgGUGU----CCGUGGg -5'
28930 3' -66 NC_006146.1 + 1228 0.73 0.201777
Target:  5'- -cCGGGGGC--GGGCCACGcGCGCCCg -3'
miRNA:   3'- ccGUCCCCGccCCCGGUGUcCGUGGG- -5'
28930 3' -66 NC_006146.1 + 1510 0.69 0.328148
Target:  5'- aGGagAGGGGcCGGGGG-CGCGgcccGGCGCCa -3'
miRNA:   3'- -CCg-UCCCC-GCCCCCgGUGU----CCGUGGg -5'
28930 3' -66 NC_006146.1 + 1836 0.75 0.128892
Target:  5'- uGGCGGGGcacaGCcGGGuGCCACAGGCACa- -3'
miRNA:   3'- -CCGUCCC----CGcCCC-CGGUGUCCGUGgg -5'
28930 3' -66 NC_006146.1 + 2160 0.73 0.201777
Target:  5'- -cCGGGGGC--GGGCCACGcGCGCCCg -3'
miRNA:   3'- ccGUCCCCGccCCCGGUGUcCGUGGG- -5'
28930 3' -66 NC_006146.1 + 2442 0.69 0.328148
Target:  5'- aGGagAGGGGcCGGGGG-CGCGgcccGGCGCCa -3'
miRNA:   3'- -CCg-UCCCC-GCCCCCgGUGU----CCGUGGg -5'
28930 3' -66 NC_006146.1 + 3092 0.73 0.201777
Target:  5'- -cCGGGGGC--GGGCCACGcGCGCCCg -3'
miRNA:   3'- ccGUCCCCGccCCCGGUGUcCGUGGG- -5'
28930 3' -66 NC_006146.1 + 3357 0.66 0.51336
Target:  5'- aGGCAGcGGG-GGGagaaaaucaacGGCCGC-GGCGuCCUa -3'
miRNA:   3'- -CCGUC-CCCgCCC-----------CCGGUGuCCGU-GGG- -5'
28930 3' -66 NC_006146.1 + 3374 0.69 0.328148
Target:  5'- aGGagAGGGGcCGGGGG-CGCGgcccGGCGCCa -3'
miRNA:   3'- -CCg-UCCCC-GCCCCCgGUGU----CCGUGGg -5'
28930 3' -66 NC_006146.1 + 3724 0.7 0.307935
Target:  5'- -aCAGGGucucUGGGGGCCGCGuGGCccuucaGCCCg -3'
miRNA:   3'- ccGUCCCc---GCCCCCGGUGU-CCG------UGGG- -5'
28930 3' -66 NC_006146.1 + 3790 0.78 0.08725
Target:  5'- gGGgGGGGGgGGGGGCaCGCGGGggauggccaCGCCCc -3'
miRNA:   3'- -CCgUCCCCgCCCCCG-GUGUCC---------GUGGG- -5'
28930 3' -66 NC_006146.1 + 4865 1.11 0.000337
Target:  5'- gGGCAGGGGCGGGGGCCACAGGCACCCc -3'
miRNA:   3'- -CCGUCCCCGCCCCCGGUGUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 5238 0.68 0.386739
Target:  5'- cGGCcucGGGGCuGuGGGGuCCACGGacccaaCGCCCg -3'
miRNA:   3'- -CCGu--CCCCG-C-CCCC-GGUGUCc-----GUGGG- -5'
28930 3' -66 NC_006146.1 + 5646 0.75 0.141872
Target:  5'- uGGCGGGGGacaGGGGgacgagcaccaGCCGCGGGUGCUUc -3'
miRNA:   3'- -CCGUCCCCg--CCCC-----------CGGUGUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 9461 0.66 0.477725
Target:  5'- cGguGGGcGCGGGGuCCGCGcccucuGGCAUCa -3'
miRNA:   3'- cCguCCC-CGCCCCcGGUGU------CCGUGGg -5'
28930 3' -66 NC_006146.1 + 10818 0.7 0.282483
Target:  5'- gGGCAccGGCuacacGGGCCACAGGUGCCUg -3'
miRNA:   3'- -CCGUccCCGcc---CCCGGUGUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 11134 0.69 0.34216
Target:  5'- cGGCcuaccuGGGGGCGGugguGGUCACggAGGCAUUCa -3'
miRNA:   3'- -CCG------UCCCCGCCc---CCGGUG--UCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 11863 0.69 0.355867
Target:  5'- gGGCuuGGGGCGGGcccgacguugacuGGCaccaACGGG-GCCCg -3'
miRNA:   3'- -CCGu-CCCCGCCC-------------CCGg---UGUCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 12798 0.67 0.43498
Target:  5'- uGCAGGGGCGGacguacGGaCgGC-GGCugCCg -3'
miRNA:   3'- cCGUCCCCGCCc-----CC-GgUGuCCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.