miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 167400 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 1836 0.75 0.128892
Target:  5'- uGGCGGGGcacaGCcGGGuGCCACAGGCACa- -3'
miRNA:   3'- -CCGUCCC----CGcCCC-CGGUGUCCGUGgg -5'
28930 3' -66 NC_006146.1 + 170095 0.75 0.141872
Target:  5'- cGGgAGGGGCcggcgccgcaggGGGGGCCGgcgGGGCGuCCCg -3'
miRNA:   3'- -CCgUCCCCG------------CCCCCGGUg--UCCGU-GGG- -5'
28930 3' -66 NC_006146.1 + 33221 0.66 0.522441
Target:  5'- uGCuccGGGGCagccGGGuGGCCGCcGGCGggUCCg -3'
miRNA:   3'- cCGu--CCCCG----CCC-CCGGUGuCCGU--GGG- -5'
28930 3' -66 NC_006146.1 + 167499 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 168431 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 170294 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 34011 0.8 0.064777
Target:  5'- aGGCAGGGG-GGGGGUCgggGCAGGCGggcgugguCCCg -3'
miRNA:   3'- -CCGUCCCCgCCCCCGG---UGUCCGU--------GGG- -5'
28930 3' -66 NC_006146.1 + 44019 0.77 0.101106
Target:  5'- cGGCGGGGaGgGGGcGGCCGaGGGC-CCCg -3'
miRNA:   3'- -CCGUCCC-CgCCC-CCGGUgUCCGuGGG- -5'
28930 3' -66 NC_006146.1 + 117249 0.76 0.125823
Target:  5'- cGGCcGGGGCcagGGGGGUCgGCAGGUuCCCc -3'
miRNA:   3'- -CCGuCCCCG---CCCCCGG-UGUCCGuGGG- -5'
28930 3' -66 NC_006146.1 + 76569 0.76 0.117017
Target:  5'- cGGCAGagcauugcGGGauGGGGCCGCagAGGCACCg -3'
miRNA:   3'- -CCGUC--------CCCgcCCCCGGUG--UCCGUGGg -5'
28930 3' -66 NC_006146.1 + 43366 0.77 0.098661
Target:  5'- uGGCAGGGgguggcuuaGCGGGGGCaGCAgcGGCugCCu -3'
miRNA:   3'- -CCGUCCC---------CGCCCCCGgUGU--CCGugGG- -5'
28930 3' -66 NC_006146.1 + 168332 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 34074 0.76 0.122822
Target:  5'- uGGCAcGGGGcCGGGGGUCccgGgGGGCAgCCg -3'
miRNA:   3'- -CCGU-CCCC-GCCCCCGG---UgUCCGUgGG- -5'
28930 3' -66 NC_006146.1 + 169264 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 55042 0.79 0.069808
Target:  5'- gGGUcGGGGcCGGGGccuGCCACAGGCGgCCg -3'
miRNA:   3'- -CCGuCCCC-GCCCC---CGGUGUCCGUgGG- -5'
28930 3' -66 NC_006146.1 + 49536 0.76 0.125823
Target:  5'- gGGCuccucuGGGGGCGGaGGCCACGccGGCcagGCCCa -3'
miRNA:   3'- -CCG------UCCCCGCCcCCGGUGU--CCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 170661 0.75 0.128892
Target:  5'- cGCAGaucGGcGCGGGggaGGCCAgGGGCGCCCc -3'
miRNA:   3'- cCGUC---CC-CGCCC---CCGGUgUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 170195 0.82 0.044448
Target:  5'- gGGCGGGgccggggccuGGCGGGGGCCagcGCGGGguCCCg -3'
miRNA:   3'- -CCGUCC----------CCGCCCCCGG---UGUCCguGGG- -5'
28930 3' -66 NC_006146.1 + 169363 0.8 0.06162
Target:  5'- uGGCGGGGGagaGGGGGCaggGCuGGCGCCg -3'
miRNA:   3'- -CCGUCCCCg--CCCCCGg--UGuCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.