Results 1 - 20 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28932 | 3' | -69.5 | NC_006146.1 | + | 137707 | 0.66 | 0.411051 |
Target: 5'- uCCGGccuccCCCCGGG-GUGC-CCgGGCCUa -3' miRNA: 3'- -GGCCcu---GGGGCCCgCGCGcGG-CCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 147452 | 0.66 | 0.395643 |
Target: 5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3' miRNA: 3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 144374 | 0.66 | 0.395643 |
Target: 5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3' miRNA: 3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 141296 | 0.66 | 0.395643 |
Target: 5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3' miRNA: 3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 137207 | 0.66 | 0.395643 |
Target: 5'- gCCGGGcacACCCCGGGgaggaagcCGgGUGggGGCCUg -3' miRNA: 3'- -GGCCC---UGGGGCCC--------GCgCGCggCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 137020 | 0.66 | 0.395643 |
Target: 5'- gCCGGGcacACCCCGGGgaggaggcCGgGUGggGGCCUg -3' miRNA: 3'- -GGCCC---UGGGGCCC--------GCgCGCggCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 112864 | 0.66 | 0.394883 |
Target: 5'- gCGGaGACUaugcgcucguaggCCGGGCucuGCGCGaaGGCCg -3' miRNA: 3'- gGCC-CUGG-------------GGCCCG---CGCGCggCCGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 129292 | 0.66 | 0.388832 |
Target: 5'- cCCGGGcccagcggaccagccCCCCGGGCcucucCGCcUCGGCCa -3' miRNA: 3'- -GGCCCu--------------GGGGCCCGc----GCGcGGCCGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 114570 | 0.66 | 0.38808 |
Target: 5'- uCCGGGcgGCCUccuucuCGcGGCGCaGCuaCGGCCUg -3' miRNA: 3'- -GGCCC--UGGG------GC-CCGCG-CGcgGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 150530 | 0.66 | 0.395643 |
Target: 5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3' miRNA: 3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 153608 | 0.66 | 0.395643 |
Target: 5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3' miRNA: 3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 50877 | 0.66 | 0.395643 |
Target: 5'- gCGGGgucuguGCCCgGacuGGCGCGgGUgCGGCCUg -3' miRNA: 3'- gGCCC------UGGGgC---CCGCGCgCG-GCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 137632 | 0.66 | 0.411051 |
Target: 5'- gCCGGGccACCCCccacccggagcgGGGCaGCGgcccggcggaccCGCCGGCg- -3' miRNA: 3'- -GGCCC--UGGGG------------CCCG-CGC------------GCGGCCGga -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 12084 | 0.66 | 0.411051 |
Target: 5'- gCCGGG-CCCCGGcCGUGUGCCugaacacGCUc -3' miRNA: 3'- -GGCCCuGGGGCCcGCGCGCGGc------CGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 75797 | 0.66 | 0.411051 |
Target: 5'- cUCGGGcGUCUCGGGCGC-CGCCuucgaGGCCc -3' miRNA: 3'- -GGCCC-UGGGGCCCGCGcGCGG-----CCGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 26140 | 0.66 | 0.408717 |
Target: 5'- aCCGGGGCCCggucggaaagagcaCGGGgGCuuaaGC-GGCCUg -3' miRNA: 3'- -GGCCCUGGG--------------GCCCgCGcg--CGgCCGGA- -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 122801 | 0.66 | 0.403301 |
Target: 5'- aCGGGcgGCCgaGGcCGCGCuGUCGGCCg -3' miRNA: 3'- gGCCC--UGGggCCcGCGCG-CGGCCGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 162033 | 0.66 | 0.403301 |
Target: 5'- aCUGGGAgCCUggGGGCGgGgGCaGGCUg -3' miRNA: 3'- -GGCCCUgGGG--CCCGCgCgCGgCCGGa -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 115908 | 0.66 | 0.398695 |
Target: 5'- cCCGGGgggcuuccggccACCCCGGGUacgggggcagcgguaGCgGCGgCGGCg- -3' miRNA: 3'- -GGCCC------------UGGGGCCCG---------------CG-CGCgGCCGga -5' |
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28932 | 3' | -69.5 | NC_006146.1 | + | 122842 | 0.66 | 0.395643 |
Target: 5'- aCGuGGACcgcacgcugCCCGGG-GCGCuggacgacccgaGCCGGCCc -3' miRNA: 3'- gGC-CCUG---------GGGCCCgCGCG------------CGGCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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