miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 3' -69.5 NC_006146.1 + 223 0.68 0.292545
Target:  5'- aCGGu-CCCCGGG-GCGCcCCuGGCCUc -3'
miRNA:   3'- gGCCcuGGGGCCCgCGCGcGG-CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 286 0.76 0.076096
Target:  5'- cCCGGGAagaCCCGGGgGCGgGCCcGGCg- -3'
miRNA:   3'- -GGCCCUg--GGGCCCgCGCgCGG-CCGga -5'
28932 3' -69.5 NC_006146.1 + 461 0.76 0.083757
Target:  5'- cCCGGGuCCCCcGGCaCGCGCCgGGCCc -3'
miRNA:   3'- -GGCCCuGGGGcCCGcGCGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 584 0.67 0.331088
Target:  5'- -aGGGGCCggGGGCGCggcccgGCGCCaGCCc -3'
miRNA:   3'- ggCCCUGGggCCCGCG------CGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 690 0.72 0.154296
Target:  5'- cCCGGGACCCCGcgcuGGCcCcCGCCaGGCCc -3'
miRNA:   3'- -GGCCCUGGGGC----CCGcGcGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 789 0.71 0.17257
Target:  5'- aCGGGacGCCCCGccGGCccccccuGCgGCGCCGGCCc -3'
miRNA:   3'- gGCCC--UGGGGC--CCG-------CG-CGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 920 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 1160 0.69 0.263176
Target:  5'- cCCGGGccGCCCCgGGGCuccccCGCGCCGaUCUg -3'
miRNA:   3'- -GGCCC--UGGGG-CCCGc----GCGCGGCcGGA- -5'
28932 3' -69.5 NC_006146.1 + 1217 0.77 0.070796
Target:  5'- cCCGGGAagaCCCGGGggcgggccaCGCGCGCCcGCCa -3'
miRNA:   3'- -GGCCCUg--GGGCCC---------GCGCGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 1392 0.76 0.083757
Target:  5'- cCCGGGuCCCCcGGCaCGCGCCgGGCCc -3'
miRNA:   3'- -GGCCCuGGGGcCCGcGCGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 1515 0.67 0.331088
Target:  5'- -aGGGGCCggGGGCGCggcccgGCGCCaGCCc -3'
miRNA:   3'- ggCCCUGGggCCCGCG------CGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 1621 0.72 0.154296
Target:  5'- cCCGGGACCCCGcgcuGGCcCcCGCCaGGCCc -3'
miRNA:   3'- -GGCCCUGGGGC----CCGcGcGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 1720 0.69 0.235733
Target:  5'- aCGGGacGCCCCGccGGCccccccuGCagGCGCCGGCCc -3'
miRNA:   3'- gGCCC--UGGGGC--CCG-------CG--CGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 1852 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 2092 0.69 0.263176
Target:  5'- cCCGGGccGCCCCgGGGCuccccCGCGCCGaUCUg -3'
miRNA:   3'- -GGCCC--UGGGG-CCCGc----GCGCGGCcGGA- -5'
28932 3' -69.5 NC_006146.1 + 2149 0.77 0.070796
Target:  5'- cCCGGGAagaCCCGGGggcgggccaCGCGCGCCcGCCa -3'
miRNA:   3'- -GGCCCUg--GGGCCC---------GCGCGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 2324 0.76 0.083757
Target:  5'- cCCGGGuCCCCcGGCaCGCGCCgGGCCc -3'
miRNA:   3'- -GGCCCuGGGGcCCGcGCGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 2447 0.67 0.331088
Target:  5'- -aGGGGCCggGGGCGCggcccgGCGCCaGCCc -3'
miRNA:   3'- ggCCCUGGggCCCGCG------CGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 2553 0.72 0.154296
Target:  5'- cCCGGGACCCCGcgcuGGCcCcCGCCaGGCCc -3'
miRNA:   3'- -GGCCCUGGGGC----CCGcGcGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 2652 0.69 0.235733
Target:  5'- aCGGGacGCCCCGccGGCccccccuGCagGCGCCGGCCc -3'
miRNA:   3'- gGCCC--UGGGGC--CCG-------CG--CGCGGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.