miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 3' -69.5 NC_006146.1 + 3716 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 1852 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 2784 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 920 1.07 0.000385
Target:  5'- cCCGGGACCCCGGGCGCGCGCCGGCCUc -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCGCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 127561 0.79 0.050423
Target:  5'- aCGGGcugcgccugcugGCCCUGGGCGgccgaggcCGCGCCGGCCg -3'
miRNA:   3'- gGCCC------------UGGGGCCCGC--------GCGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 168130 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 167198 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 169994 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 169062 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 36209 0.78 0.058343
Target:  5'- cCUGGGcuCCCCGGGaGCGCaaGCCGGCCg -3'
miRNA:   3'- -GGCCCu-GGGGCCCgCGCG--CGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 21799 0.78 0.061242
Target:  5'- gCGGGAUgCCGGGCGCGCGCCc-CCg -3'
miRNA:   3'- gGCCCUGgGGCCCGCGCGCGGccGGa -5'
28932 3' -69.5 NC_006146.1 + 8516 0.77 0.06911
Target:  5'- aCCGGGGUCCCGGGCGCGgGCgC-GCCa -3'
miRNA:   3'- -GGCCCUGGGGCCCGCGCgCG-GcCGGa -5'
28932 3' -69.5 NC_006146.1 + 2149 0.77 0.070796
Target:  5'- cCCGGGAagaCCCGGGggcgggccaCGCGCGCCcGCCa -3'
miRNA:   3'- -GGCCCUg--GGGCCC---------GCGCGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 3081 0.77 0.070796
Target:  5'- cCCGGGAagaCCCGGGggcgggccaCGCGCGCCcGCCa -3'
miRNA:   3'- -GGCCCUg--GGGCCC---------GCGCGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 1217 0.77 0.070796
Target:  5'- cCCGGGAagaCCCGGGggcgggccaCGCGCGCCcGCCa -3'
miRNA:   3'- -GGCCCUg--GGGCCC---------GCGCGCGGcCGGa -5'
28932 3' -69.5 NC_006146.1 + 286 0.76 0.076096
Target:  5'- cCCGGGAagaCCCGGGgGCGgGCCcGGCg- -3'
miRNA:   3'- -GGCCCUg--GGGCCCgCGCgCGG-CCGga -5'
28932 3' -69.5 NC_006146.1 + 32022 0.76 0.079839
Target:  5'- -aGGGGCCUCGGGaCGagGCGCUGGCCc -3'
miRNA:   3'- ggCCCUGGGGCCC-GCg-CGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 118018 0.76 0.079839
Target:  5'- gCGGGGCUCgGGGCGCGCGaggaccaCGGaCCUg -3'
miRNA:   3'- gGCCCUGGGgCCCGCGCGCg------GCC-GGA- -5'
28932 3' -69.5 NC_006146.1 + 461 0.76 0.083757
Target:  5'- cCCGGGuCCCCcGGCaCGCGCCgGGCCc -3'
miRNA:   3'- -GGCCCuGGGGcCCGcGCGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 3256 0.76 0.083757
Target:  5'- cCCGGGuCCCCcGGCaCGCGCCgGGCCc -3'
miRNA:   3'- -GGCCCuGGGGcCCGcGCGCGG-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.