miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 3' -69.5 NC_006146.1 + 167198 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 170436 0.73 0.137473
Target:  5'- gCGGGGCCC--GGCGCGUGCCGGg-- -3'
miRNA:   3'- gGCCCUGGGgcCCGCGCGCGGCCgga -5'
28932 3' -69.5 NC_006146.1 + 33692 0.73 0.14399
Target:  5'- cCCGGcuuccuCCCCGGG-GUGUGCCcGGCCUa -3'
miRNA:   3'- -GGCCcu----GGGGCCCgCGCGCGG-CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 137707 0.66 0.411051
Target:  5'- uCCGGccuccCCCCGGG-GUGC-CCgGGCCUa -3'
miRNA:   3'- -GGCCcu---GGGGCCCgCGCGcGG-CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 95518 0.76 0.085784
Target:  5'- uCCGGGAgCUguCGGGUGCgGCGCCuGGCCa -3'
miRNA:   3'- -GGCCCUgGG--GCCCGCG-CGCGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 44081 0.75 0.089338
Target:  5'- gCCGGGAcuggggugguuccaCCUCGGGcCGCGCGCuCGGCg- -3'
miRNA:   3'- -GGCCCU--------------GGGGCCC-GCGCGCG-GCCGga -5'
28932 3' -69.5 NC_006146.1 + 168642 0.74 0.106246
Target:  5'- cCCGGGG-CCCGaGCGCGCGUCGGUg- -3'
miRNA:   3'- -GGCCCUgGGGCcCGCGCGCGGCCGga -5'
28932 3' -69.5 NC_006146.1 + 129383 0.74 0.108785
Target:  5'- cCCGcGGAUCCCGGGCGUcaGCCGGgCg -3'
miRNA:   3'- -GGC-CCUGGGGCCCGCGcgCGGCCgGa -5'
28932 3' -69.5 NC_006146.1 + 57344 0.73 0.127311
Target:  5'- gCGGGGCCCCGGGUGUcggugagggaggcuGCGgCGGUg- -3'
miRNA:   3'- gGCCCUGGGGCCCGCG--------------CGCgGCCGga -5'
28932 3' -69.5 NC_006146.1 + 169505 0.73 0.137473
Target:  5'- gCGGGGCCC--GGCGCGUGCCGGg-- -3'
miRNA:   3'- gGCCCUGGGgcCCGCGCGCGGCCgga -5'
28932 3' -69.5 NC_006146.1 + 167709 0.73 0.131228
Target:  5'- cCCGGGG-CCCGaGCGCGCGUCggguggGGCCUg -3'
miRNA:   3'- -GGCCCUgGGGCcCGCGCGCGG------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 167641 0.74 0.119517
Target:  5'- gCGGGGCCC--GGCGCGUGCCgggGGCCc -3'
miRNA:   3'- gGCCCUGGGgcCCGCGCGCGG---CCGGa -5'
28932 3' -69.5 NC_006146.1 + 168130 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 169574 0.73 0.131228
Target:  5'- cCCGGGG-CCCGaGCGCGCGUCggguggGGCCUg -3'
miRNA:   3'- -GGCCCUgGGGCcCGCGCGCGG------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 169062 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 41217 0.74 0.116745
Target:  5'- uCCGcGGGCaCUGGGCGCGCG-UGGCCa -3'
miRNA:   3'- -GGC-CCUGgGGCCCGCGCGCgGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 168573 0.73 0.137473
Target:  5'- gCGGGGCCC--GGCGCGUGCCGGg-- -3'
miRNA:   3'- gGCCCUGGGgcCCGCGCGCGGCCgga -5'
28932 3' -69.5 NC_006146.1 + 33224 0.73 0.14399
Target:  5'- uCCGGGGCagCCGGGUgGC-CGCCGGCg- -3'
miRNA:   3'- -GGCCCUGg-GGCCCG-CGcGCGGCCGga -5'
28932 3' -69.5 NC_006146.1 + 169994 0.79 0.051666
Target:  5'- cCCGGGGuCCCgGGGgGCgGCGCgCGGCCUu -3'
miRNA:   3'- -GGCCCU-GGGgCCCgCG-CGCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 47032 0.75 0.098961
Target:  5'- gCGGGcGCCCUGGGUGCGagaagggGCCGGUCg -3'
miRNA:   3'- gGCCC-UGGGGCCCGCGCg------CGGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.