miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 144197 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 121360 0.66 0.906409
Target:  5'- gGCCGGCgugGCCUccgCCCCCAGa------ -3'
miRNA:   3'- gCGGCUGa--UGGA---GGGGGUCgauaagu -5'
28936 5' -56 NC_006146.1 + 69641 0.66 0.928551
Target:  5'- gGuuGACUGCCcccagcaccaugUCCCCCAccauaaaguagaaGCUGUUg- -3'
miRNA:   3'- gCggCUGAUGG------------AGGGGGU-------------CGAUAAgu -5'
28936 5' -56 NC_006146.1 + 168535 0.66 0.929072
Target:  5'- cCGCgGAC-GCCUgUCCCGGCUcgUa- -3'
miRNA:   3'- -GCGgCUGaUGGAgGGGGUCGAuaAgu -5'
28936 5' -56 NC_006146.1 + 156509 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 44657 0.69 0.781597
Target:  5'- cCGCCGaACUcACCUCgCCCGGCa----- -3'
miRNA:   3'- -GCGGC-UGA-UGGAGgGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 1749 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 2681 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 122880 0.68 0.857964
Target:  5'- aGCCGGCccgccgUGCCUCCCCC-GCc----- -3'
miRNA:   3'- gCGGCUG------AUGGAGGGGGuCGauaagu -5'
28936 5' -56 NC_006146.1 + 121007 0.66 0.904558
Target:  5'- -uCCGACUACCUCuccuaccuggaggaCCCCAGCc----- -3'
miRNA:   3'- gcGGCUGAUGGAG--------------GGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 165684 0.67 0.880042
Target:  5'- gGCCGGCaaggACCUgcaCCCCUAGCUc---- -3'
miRNA:   3'- gCGGCUGa---UGGA---GGGGGUCGAuaagu -5'
28936 5' -56 NC_006146.1 + 112902 0.68 0.834071
Target:  5'- gGCCGAg-ACCcgggCCUCCAGCUcgUCc -3'
miRNA:   3'- gCGGCUgaUGGa---GGGGGUCGAuaAGu -5'
28936 5' -56 NC_006146.1 + 147275 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 51036 0.66 0.900158
Target:  5'- aGCUcGCUgGCCUUCCCCcGCUGUUa- -3'
miRNA:   3'- gCGGcUGA-UGGAGGGGGuCGAUAAgu -5'
28936 5' -56 NC_006146.1 + 150353 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 3613 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 124660 0.66 0.900158
Target:  5'- cCGCCG-CUucaccggcCCUCCCuCCGGCU--UCAu -3'
miRNA:   3'- -GCGGCuGAu-------GGAGGG-GGUCGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 40620 0.66 0.918211
Target:  5'- cCGCCG-CUGCUUCUCCCGcGUUAc--- -3'
miRNA:   3'- -GCGGCuGAUGGAGGGGGU-CGAUaagu -5'
28936 5' -56 NC_006146.1 + 153431 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 817 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.