miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 3' -44.6 NC_006146.1 + 169662 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 168730 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 167798 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 166354 0.69 0.999872
Target:  5'- --uAGCUGGGGgaggUAGUcgGCGgCUGCCg -3'
miRNA:   3'- guuUCGAUCCU----AUCAuaUGU-GAUGGg -5'
28940 3' -44.6 NC_006146.1 + 165093 0.66 0.999999
Target:  5'- aAGAGCUGGGAcuggcccagacuaUGGUcUGCGCUGuuUu -3'
miRNA:   3'- gUUUCGAUCCU-------------AUCAuAUGUGAUggG- -5'
28940 3' -44.6 NC_006146.1 + 163368 0.84 0.719252
Target:  5'- ---uGUUAGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- guuuCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163302 0.75 0.983278
Target:  5'- ---uGCUAucccaauuuagguGGGUAGUGUAUACUAUCCu -3'
miRNA:   3'- guuuCGAU-------------CCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163206 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163153 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163123 0.68 0.999984
Target:  5'- --uAGCUuucGGUAGcAUAUGCUACCCu -3'
miRNA:   3'- guuUCGAuc-CUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163100 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163067 0.74 0.991511
Target:  5'- uCAuAGCUGuGGGUAGcAUAUGCUAUCCu -3'
miRNA:   3'- -GUuUCGAU-CCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162937 0.78 0.947549
Target:  5'- cUAAAGUUGGGAUAGcAUAUGCUAUCUu -3'
miRNA:   3'- -GUUUCGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162915 0.66 0.999999
Target:  5'- --cAGCUGGG-UAGUAUAUGCUGu-- -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUggg -5'
28940 3' -44.6 NC_006146.1 + 162888 0.66 0.999998
Target:  5'- ----aUUGGGGUAGcAUAUGCUAUCCu -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162836 0.66 0.999999
Target:  5'- --uAGUUAGG-UAGcAUAUGCUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162806 0.69 0.999872
Target:  5'- -uAAGUUcGGGUAGcAUAUGCUAUCCa -3'
miRNA:   3'- guUUCGAuCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162753 0.74 0.991511
Target:  5'- -uAGGUUuGGAUAGcAUACGCUACCa -3'
miRNA:   3'- guUUCGAuCCUAUCaUAUGUGAUGGg -5'
28940 3' -44.6 NC_006146.1 + 162108 0.75 0.981348
Target:  5'- --cGGUUGGGAaAGUGUGCACUGgggggccguCCCa -3'
miRNA:   3'- guuUCGAUCCUaUCAUAUGUGAU---------GGG- -5'
28940 3' -44.6 NC_006146.1 + 161723 0.72 0.998406
Target:  5'- gAAGGCUugGGGGUGGgugGCACggugggaGCCCg -3'
miRNA:   3'- gUUUCGA--UCCUAUCauaUGUGa------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.