Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 39519 | 0.66 | 0.893755 |
Target: 5'- gUGGGUGGCugAUggGCUGggggaggCGGCgcaaGGGCu -3' miRNA: 3'- -ACCUAUCGugUA--UGACg------GCCGg---CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 160676 | 0.66 | 0.893755 |
Target: 5'- aGGGccGGCACAUGaccaggGCCGGuaGaGGCa -3' miRNA: 3'- aCCUa-UCGUGUAUga----CGGCCggC-CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 144729 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 150885 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 153963 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 141652 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 159833 | 0.66 | 0.893755 |
Target: 5'- cGGGUGGgGCAacCUGUgGGC-GGGUg -3' miRNA: 3'- aCCUAUCgUGUauGACGgCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 157041 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 147807 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 39841 | 0.66 | 0.88708 |
Target: 5'- cGGcc-GCACAguggGCCGGCgGGGg -3' miRNA: 3'- aCCuauCGUGUaugaCGGCCGgCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 163237 | 0.66 | 0.88708 |
Target: 5'- aGGGUAGCGC-UGCU-CCaGGaaccCCGGGUu -3' miRNA: 3'- aCCUAUCGUGuAUGAcGG-CC----GGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 53466 | 0.66 | 0.88708 |
Target: 5'- cGGGaGGCGCGgg-UGCCucgucggucagGGCCGGGg -3' miRNA: 3'- aCCUaUCGUGUaugACGG-----------CCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 61588 | 0.66 | 0.88708 |
Target: 5'- aGGA-AGaGCcgGCUGCagCGGCCGcGGCc -3' miRNA: 3'- aCCUaUCgUGuaUGACG--GCCGGC-CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 50178 | 0.66 | 0.88708 |
Target: 5'- gGGGgcguuuGCACuUGCgGCgGGCuCGGGUa -3' miRNA: 3'- aCCUau----CGUGuAUGaCGgCCG-GCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 3812 | 0.66 | 0.882968 |
Target: 5'- gGGAUGGcCACGccccccucacuuuuuUGgaGCCGGC-GGGUa -3' miRNA: 3'- aCCUAUC-GUGU---------------AUgaCGGCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 126968 | 0.66 | 0.880183 |
Target: 5'- cUGGAUAGacccCGCccgACUGCCGGgcgacgcggucCCGGaGCu -3' miRNA: 3'- -ACCUAUC----GUGua-UGACGGCC-----------GGCC-CG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 136995 | 0.66 | 0.880183 |
Target: 5'- cGGAggAGCucCAggACggggGuaGGCCGGGCa -3' miRNA: 3'- aCCUa-UCGu-GUa-UGa---CggCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 20208 | 0.66 | 0.880183 |
Target: 5'- aGGAggcugGGCAUGUACUGCgugcaggauuCGGCCcuGGUc -3' miRNA: 3'- aCCUa----UCGUGUAUGACG----------GCCGGc-CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 120058 | 0.66 | 0.880183 |
Target: 5'- cUGG-UGGCGC-UGCUGC--GCCGGGa -3' miRNA: 3'- -ACCuAUCGUGuAUGACGgcCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 77889 | 0.66 | 0.880183 |
Target: 5'- gGGGUcggAGCAC--GCUGCUuaacaggcgcagGGgCGGGCg -3' miRNA: 3'- aCCUA---UCGUGuaUGACGG------------CCgGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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