miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 153963 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 144729 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 159833 0.66 0.893755
Target:  5'- cGGGUGGgGCAacCUGUgGGC-GGGUg -3'
miRNA:   3'- aCCUAUCgUGUauGACGgCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 141652 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 157041 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 160676 0.66 0.893755
Target:  5'- aGGGccGGCACAUGaccaggGCCGGuaGaGGCa -3'
miRNA:   3'- aCCUa-UCGUGUAUga----CGGCCggC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 147807 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 150885 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 39519 0.66 0.893755
Target:  5'- gUGGGUGGCugAUggGCUGggggaggCGGCgcaaGGGCu -3'
miRNA:   3'- -ACCUAUCGugUA--UGACg------GCCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 39841 0.66 0.88708
Target:  5'- cGGcc-GCACAguggGCCGGCgGGGg -3'
miRNA:   3'- aCCuauCGUGUaugaCGGCCGgCCCg -5'
28942 3' -57.1 NC_006146.1 + 50178 0.66 0.88708
Target:  5'- gGGGgcguuuGCACuUGCgGCgGGCuCGGGUa -3'
miRNA:   3'- aCCUau----CGUGuAUGaCGgCCG-GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 163237 0.66 0.88708
Target:  5'- aGGGUAGCGC-UGCU-CCaGGaaccCCGGGUu -3'
miRNA:   3'- aCCUAUCGUGuAUGAcGG-CC----GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 61588 0.66 0.88708
Target:  5'- aGGA-AGaGCcgGCUGCagCGGCCGcGGCc -3'
miRNA:   3'- aCCUaUCgUGuaUGACG--GCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 53466 0.66 0.88708
Target:  5'- cGGGaGGCGCGgg-UGCCucgucggucagGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUaugACGG-----------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 3812 0.66 0.882968
Target:  5'- gGGAUGGcCACGccccccucacuuuuuUGgaGCCGGC-GGGUa -3'
miRNA:   3'- aCCUAUC-GUGU---------------AUgaCGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 120058 0.66 0.880183
Target:  5'- cUGG-UGGCGC-UGCUGC--GCCGGGa -3'
miRNA:   3'- -ACCuAUCGUGuAUGACGgcCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 126968 0.66 0.880183
Target:  5'- cUGGAUAGacccCGCccgACUGCCGGgcgacgcggucCCGGaGCu -3'
miRNA:   3'- -ACCUAUC----GUGua-UGACGGCC-----------GGCC-CG- -5'
28942 3' -57.1 NC_006146.1 + 136995 0.66 0.880183
Target:  5'- cGGAggAGCucCAggACggggGuaGGCCGGGCa -3'
miRNA:   3'- aCCUa-UCGu-GUa-UGa---CggCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 20208 0.66 0.880183
Target:  5'- aGGAggcugGGCAUGUACUGCgugcaggauuCGGCCcuGGUc -3'
miRNA:   3'- aCCUa----UCGUGUAUGACG----------GCCGGc-CCG- -5'
28942 3' -57.1 NC_006146.1 + 77889 0.66 0.880183
Target:  5'- gGGGUcggAGCAC--GCUGCUuaacaggcgcagGGgCGGGCg -3'
miRNA:   3'- aCCUA---UCGUGuaUGACGG------------CCgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.