Results 41 - 60 of 165 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 113563 | 0.7 | 0.675612 |
Target: 5'- cGGAaguUGGCGCuccAUGCUGaCCcucgggagaGGCCGGGUc -3' miRNA: 3'- aCCU---AUCGUG---UAUGAC-GG---------CCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 154633 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 61418 | 0.7 | 0.655427 |
Target: 5'- cUGcGGUGGC-CA-ACgcggGCaCGGCCGGGCu -3' miRNA: 3'- -AC-CUAUCGuGUaUGa---CG-GCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 37869 | 0.7 | 0.665533 |
Target: 5'- -aGAUAG-GCAUAgaGCaGGCCGGGCu -3' miRNA: 3'- acCUAUCgUGUAUgaCGgCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 166486 | 0.7 | 0.665533 |
Target: 5'- cGuGGUAGCuagaaucgcaGCGUGgUGCCaGUCGGGCg -3' miRNA: 3'- aC-CUAUCG----------UGUAUgACGGcCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 114152 | 0.7 | 0.675612 |
Target: 5'- cGGAccaGGCGCA---UGCUGGCCcuGGGCa -3' miRNA: 3'- aCCUa--UCGUGUaugACGGCCGG--CCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 45398 | 0.7 | 0.645303 |
Target: 5'- gGGGUugAGCACGUcggugggccagcGCgagGCCccGGCCGGGUu -3' miRNA: 3'- aCCUA--UCGUGUA------------UGa--CGG--CCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 15030 | 0.7 | 0.675612 |
Target: 5'- gGGAggGGCGCcugGCcaggGCCcGCCGGGCc -3' miRNA: 3'- aCCUa-UCGUGua-UGa---CGGcCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 145399 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 102962 | 0.69 | 0.744701 |
Target: 5'- aGGGcAGCcgcccauccgggACAUACUccacgGUgGGCCGGGCu -3' miRNA: 3'- aCCUaUCG------------UGUAUGA-----CGgCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 42439 | 0.69 | 0.715492 |
Target: 5'- cUGGGUGcGCGCcgccaGCaUGgCGGCCGGGUc -3' miRNA: 3'- -ACCUAU-CGUGua---UG-ACgGCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 19027 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 100879 | 0.69 | 0.754255 |
Target: 5'- cGGGUcuCACGgacCUGUCGGCCuGGGUc -3' miRNA: 3'- aCCUAucGUGUau-GACGGCCGG-CCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 5221 | 0.69 | 0.705605 |
Target: 5'- gGGGU-GCAgGUcCuUGCCGGCCucgGGGCu -3' miRNA: 3'- aCCUAuCGUgUAuG-ACGGCCGG---CCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 33152 | 0.69 | 0.705605 |
Target: 5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3' miRNA: 3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 33276 | 0.69 | 0.705605 |
Target: 5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3' miRNA: 3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 22105 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 25183 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 28261 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
|||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 12872 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home