miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 157710 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 148477 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 40275 0.72 0.554627
Target:  5'- aGGGaGGCGCGggcggagGCggGCCaaagaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGUa------UGa-CGG-----CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 115409 0.74 0.423026
Target:  5'- aGGA-GGCA---GCUGgCGGCCGGGCc -3'
miRNA:   3'- aCCUaUCGUguaUGACgGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 127977 0.68 0.791329
Target:  5'- cGGAgcuUGGCGCc-GCUGCUGacaGCCGGGa -3'
miRNA:   3'- aCCU---AUCGUGuaUGACGGC---CGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 14046 0.69 0.72531
Target:  5'- gGGGgcaGGCGCAaGC-GCCGGCUGGcuGCg -3'
miRNA:   3'- aCCUa--UCGUGUaUGaCGGCCGGCC--CG- -5'
28942 3' -57.1 NC_006146.1 + 142321 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 20563 0.75 0.388113
Target:  5'- cGGAagaggAGCACAgACUaGCCGGCCugcgcccGGGCg -3'
miRNA:   3'- aCCUa----UCGUGUaUGA-CGGCCGG-------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 124992 0.69 0.72531
Target:  5'- ----cGGCACGguca-CCGGCCGGGCg -3'
miRNA:   3'- accuaUCGUGUaugacGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 54019 0.8 0.208699
Target:  5'- cUGGAgcaGGCAC-UGCUGCgccUGGCCGGGCc -3'
miRNA:   3'- -ACCUa--UCGUGuAUGACG---GCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 145399 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 42439 0.69 0.715492
Target:  5'- cUGGGUGcGCGCcgccaGCaUGgCGGCCGGGUc -3'
miRNA:   3'- -ACCUAU-CGUGua---UG-ACgGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 27349 0.71 0.625033
Target:  5'- cGGGUGGCGCGgcaagGCCGGg-GGGCg -3'
miRNA:   3'- aCCUAUCGUGUauga-CGGCCggCCCG- -5'
28942 3' -57.1 NC_006146.1 + 43513 0.71 0.594685
Target:  5'- aGGGUccgGGC-CAgGCUGCCGGCCaccaucagugGGGUg -3'
miRNA:   3'- aCCUA---UCGuGUaUGACGGCCGG----------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 115456 0.72 0.534887
Target:  5'- cGGGUGGcCACGguacUGCUGUCGG-CGGGUc -3'
miRNA:   3'- aCCUAUC-GUGU----AUGACGGCCgGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 52978 0.74 0.423026
Target:  5'- cGGuaguGCGCAggcggacCUGCCGGCCGuGGCc -3'
miRNA:   3'- aCCuau-CGUGUau-----GACGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 165798 0.67 0.817688
Target:  5'- -cGGUGGCACg----GCCGGCUagggGGGCg -3'
miRNA:   3'- acCUAUCGUGuaugaCGGCCGG----CCCG- -5'
28942 3' -57.1 NC_006146.1 + 64457 0.68 0.800267
Target:  5'- uUGGGUGGCGCugucCUGCUGaa-GGGCa -3'
miRNA:   3'- -ACCUAUCGUGuau-GACGGCcggCCCG- -5'
28942 3' -57.1 NC_006146.1 + 7030 0.68 0.773039
Target:  5'- aGGAUGGCAU--GCUGgaaUUGGCCcGGCa -3'
miRNA:   3'- aCCUAUCGUGuaUGAC---GGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 122140 0.69 0.735049
Target:  5'- ----aAGCuGCGgcgGCUGCUggaGGCCGGGCg -3'
miRNA:   3'- accuaUCG-UGUa--UGACGG---CCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.