miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 161594 0.82 0.154792
Target:  5'- cGGAUAGCAaAUGCUGcCCGGCCGG-Ca -3'
miRNA:   3'- aCCUAUCGUgUAUGAC-GGCCGGCCcG- -5'
28942 3' -57.1 NC_006146.1 + 142321 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 148477 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 39519 0.66 0.893755
Target:  5'- gUGGGUGGCugAUggGCUGggggaggCGGCgcaaGGGCu -3'
miRNA:   3'- -ACCUAUCGugUA--UGACg------GCCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 52978 0.74 0.423026
Target:  5'- cGGuaguGCGCAggcggacCUGCCGGCCGuGGCc -3'
miRNA:   3'- aCCuau-CGUGUau-----GACGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 36220 0.73 0.496207
Target:  5'- cGGG-AGCGCAa---GCCGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUaugaCGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 115456 0.72 0.534887
Target:  5'- cGGGUGGcCACGguacUGCUGUCGG-CGGGUc -3'
miRNA:   3'- aCCUAUC-GUGU----AUGACGGCCgGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 14773 0.72 0.541769
Target:  5'- cGGGgcucgGGCACcuguuggcgGCUgaggggaaggagagGCCGGCCGGGCc -3'
miRNA:   3'- aCCUa----UCGUGua-------UGA--------------CGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 43513 0.71 0.594685
Target:  5'- aGGGUccgGGC-CAgGCUGCCGGCCaccaucagugGGGUg -3'
miRNA:   3'- aCCUA---UCGuGUaUGACGGCCGG----------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 15030 0.7 0.675612
Target:  5'- gGGAggGGCGCcugGCcaggGCCcGCCGGGCc -3'
miRNA:   3'- aCCUa-UCGUGua-UGa---CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 101837 0.71 0.614902
Target:  5'- cGGGgcccgAGCGCucggGCUGCCgcaccacggguGGCgGGGCg -3'
miRNA:   3'- aCCUa----UCGUGua--UGACGG-----------CCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 40275 0.72 0.554627
Target:  5'- aGGGaGGCGCGggcggagGCggGCCaaagaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGUa------UGa-CGG-----CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 54019 0.8 0.208699
Target:  5'- cUGGAgcaGGCAC-UGCUGCgccUGGCCGGGCc -3'
miRNA:   3'- -ACCUa--UCGUGuAUGACG---GCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 27349 0.71 0.625033
Target:  5'- cGGGUGGCGCGgcaagGCCGGg-GGGCg -3'
miRNA:   3'- aCCUAUCGUGUauga-CGGCCggCCCG- -5'
28942 3' -57.1 NC_006146.1 + 20563 0.75 0.388113
Target:  5'- cGGAagaggAGCACAgACUaGCCGGCCugcgcccGGGCg -3'
miRNA:   3'- aCCUa----UCGUGUaUGA-CGGCCGG-------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 113494 0.72 0.544728
Target:  5'- --cGUAGagGCGUGC-GUCGGCCGGGCa -3'
miRNA:   3'- accUAUCg-UGUAUGaCGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 127581 0.71 0.625033
Target:  5'- cUGGGcGGC-CGagGCcgcGCCGGCCGGGUg -3'
miRNA:   3'- -ACCUaUCGuGUa-UGa--CGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 145399 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 115409 0.74 0.423026
Target:  5'- aGGA-GGCA---GCUGgCGGCCGGGCc -3'
miRNA:   3'- aCCUaUCGUguaUGACgGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 112748 0.73 0.5154
Target:  5'- gUGGucgaGGCGCAgaa-GCCGGCCaGGGCa -3'
miRNA:   3'- -ACCua--UCGUGUaugaCGGCCGG-CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.