miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 33244 0.66 0.998794
Target:  5'- ---gCCGGCGGGUccgccGGgcC--GCUGCCc -3'
miRNA:   3'- gauaGGCCGCCCA-----UCauGuaUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 57932 0.66 0.998515
Target:  5'- gCUggCCGGCGccgccauGGUGcUGCAUcaccACUGCCa -3'
miRNA:   3'- -GAuaGGCCGC-------CCAUcAUGUA----UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 33120 0.66 0.998248
Target:  5'- ---gCCGGCGGGUucgcCGggccGCUGCCc -3'
miRNA:   3'- gauaGGCCGCCCAucauGUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 69675 0.66 0.998248
Target:  5'- ---gCUGGgGGGUGGcAUAUcugaagGCUGCCa -3'
miRNA:   3'- gauaGGCCgCCCAUCaUGUA------UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 170090 0.66 0.998248
Target:  5'- ---gCCGGCGGGaGGgGCcgGC-GCCg -3'
miRNA:   3'- gauaGGCCGCCCaUCaUGuaUGaUGG- -5'
28942 5' -49.9 NC_006146.1 + 99055 0.66 0.997506
Target:  5'- ---cCCGGCGGGUGucgGCGg--UGCCg -3'
miRNA:   3'- gauaGGCCGCCCAUca-UGUaugAUGG- -5'
28942 5' -49.9 NC_006146.1 + 117431 0.66 0.997506
Target:  5'- aUAUCCGuGaCGGGggcUGCAUACUugUu -3'
miRNA:   3'- gAUAGGC-C-GCCCaucAUGUAUGAugG- -5'
28942 5' -49.9 NC_006146.1 + 33593 0.67 0.997048
Target:  5'- -gGUCCGGUuuGGGUGG-GCGUGgU-CCg -3'
miRNA:   3'- gaUAGGCCG--CCCAUCaUGUAUgAuGG- -5'
28942 5' -49.9 NC_006146.1 + 158142 0.67 0.996464
Target:  5'- -gGUCCGGCaGGUcacaGGUgggcucaGCGUGC-ACCa -3'
miRNA:   3'- gaUAGGCCGcCCA----UCA-------UGUAUGaUGG- -5'
28942 5' -49.9 NC_006146.1 + 163116 0.67 0.995919
Target:  5'- aCUAUCCuaGCuuucGGUAGcAUAUGCUACCc -3'
miRNA:   3'- -GAUAGGc-CGc---CCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 43003 0.67 0.995235
Target:  5'- ---gCCGcCGGGUgagaGGUGCGaggGCUGCCg -3'
miRNA:   3'- gauaGGCcGCCCA----UCAUGUa--UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162796 0.67 0.995161
Target:  5'- gCUAUCCaGauaaguuCGGGUAGcAUAUGCUAUCc -3'
miRNA:   3'- -GAUAGGcC-------GCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 36173 0.67 0.99446
Target:  5'- ---cCUGGCuGGccUGGUGCAUGCaUGCCu -3'
miRNA:   3'- gauaGGCCGcCC--AUCAUGUAUG-AUGG- -5'
28942 5' -49.9 NC_006146.1 + 161137 0.68 0.993586
Target:  5'- --uUUCGGguuccCGGGUAGgaaGUACUGCCc -3'
miRNA:   3'- gauAGGCC-----GCCCAUCaugUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 18860 0.68 0.992605
Target:  5'- gCUG-CCGGgGuGGUGG-ACGUGCggggGCCu -3'
miRNA:   3'- -GAUaGGCCgC-CCAUCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 43940 0.68 0.992501
Target:  5'- gUGUuuGaaaaggcGCGGGaUAGUGUAUGCUACCu -3'
miRNA:   3'- gAUAggC-------CGCCC-AUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 59433 0.68 0.992501
Target:  5'- gUAUgCCGGgGGGUGGUuucacugGCAcgACUggGCCg -3'
miRNA:   3'- gAUA-GGCCgCCCAUCA-------UGUa-UGA--UGG- -5'
28942 5' -49.9 NC_006146.1 + 168366 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 167434 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 170229 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.