miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 170304 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 170059 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 169373 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 169127 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 168662 0.66 0.638552
Target:  5'- cGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 168441 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 168195 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 167509 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 167263 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 162627 0.69 0.484806
Target:  5'- gAGUGGGGcucccagagagaacgGGGGUGCAUGCCcccucGUaGGCa -3'
miRNA:   3'- -UCACCCC---------------UCCCGUGUGCGGu----CGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 160114 0.67 0.599219
Target:  5'- uAGUGGaGGAuagagugaauGGGCggcggacuuuggcagGCugGCCuuuaaggccAGCUGGCg -3'
miRNA:   3'- -UCACC-CCU----------CCCG---------------UGugCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 157845 0.71 0.370839
Target:  5'- --aGGGGAcGGGCACcgaGCGCCGcCUGGa -3'
miRNA:   3'- ucaCCCCU-CCCGUG---UGCGGUcGACCg -5'
28944 3' -61.9 NC_006146.1 + 157612 0.69 0.481155
Target:  5'- cGUGGGGGuagucgcgggcGGGCAC-CGCCugGGUcuugGGCa -3'
miRNA:   3'- uCACCCCU-----------CCCGUGuGCGG--UCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 156988 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 156842 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 156690 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 155575 0.68 0.546754
Target:  5'- --cGGGGcgcccgccaGGGGCACACcggGGCUGGCc -3'
miRNA:   3'- ucaCCCC---------UCCCGUGUGcggUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 154674 0.73 0.279079
Target:  5'- uGGUGGcGGGGGGCGCugcUGCUGGgUGGUc -3'
miRNA:   3'- -UCACC-CCUCCCGUGu--GCGGUCgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.